Detailed information on CNT30576966


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONORUT002241, E-value = 2e-129

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30694181Oryza barthiiOryza sativa15.6328.2292.39276reverse complement
CNT30552962Oryza barthiiOryza glaberrima15.5264.4792.34274reverse complement
CNT30369559Oryza barthiiOryza glumipatula15.0155.6792.83265reverse complement
CNT30109442Oryza barthiiOryza longistaminata9.5761.994.08169reverse complement
CNT30115470Oryza barthiiOryza nivara15.5226.1794.16274reverse complement

Expression of CNT30576966

Peptides detected in this lncRNA

>peptide 1 (46 aa)
MTRWLMGTNVFIKFIHRSLVPKQVVMAKNARRPPNLNVPKCEKHRR*

>peptide 2 (36 aa)
KYLANDTGNKAADSAQTYHTKSKRTAKAIYTASTPI*

>peptide 3 (90 aa)
MAMLLLSNSITSCQPSHISTRIHTSNKQVPASILPKVFLLRGGVIVTPRNSRIEFQAECALKSPSRTGRGTQVTKLTYRSTSYKHYKSLT*

>peptide 4 (82 aa)
MGAGATAQGRGHGAAKARCPQCACLAISASPLTKFRVAMFGHEFLCLVPGLSATSTKILHSTTRFRSTSLHCEGPKSYQGFY*

>peptide 5 (46 aa)
MEPGFSTVRKMTTLYKAHTYIYIVQAYQVNYNVRIYFYVSLTMIQQ*

Sequence

>CNT30576966
AAGTACTTAGCCAACGACACCGGCAACAAAGCTGCTGACTCAGCACAAACATACCATACAAAAAGCAAAAGAACAGCTAAGGCCATTTACACTGCAAGCA
CCCCCATATGAGTTACCATAGGATGACACATAGGATAAAAGAGGTTTGAAGGCACTCTCTTCAAAGTGCAAGCACCACTAGTGGGACCCACAAATATCTT
CACCAAATCCCCAACTGCTTCTCCTCCCTCACTCGTCACGCCACCAAATCCCTAAATCCGGCGTCGGCTCAACCCTCCTCCACCGCCCATTCCCCCGCCG
CCTCCGCCCCCGCCGCTGGCTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNTCCATCCAGCCGCCGCCGCCATTTTTGTTTCATGGGAGCCGGTGCCACAGCGCAAGGGAGAGGGCACGGGGCGGCGAA
GGCACGCTGCCCACAGTGTGCATGCCTCGCGATTTCAGCGTCGCCCTTGACGAAGTTTCGCGTCGCTATGTTTGGTCACGAGTTTCTCTGTTTGGTCCCG
GGTCTTAGCGCCACGTCGACGAAAATCCTACATAGCACAACAAGGTTCCGCTCCACGTCCTTGCACTGTGAAGGGCCTAAGAGCTACCAAGGCTTTTACT
AGTTACTGCCCTCTATCCGGCAGATCAGCTGCTTCTTCCTACTTCTTGGATGCTGGCATGCAGTGAGACCCTCTAAGCCTCCAGCTCTCTCCTCAGCTTC
AATGGAACCAGGTTTTTCCACTGTAAGAAAAATGACAACGCTTTATAAGGCACATACGTACATATATATAGTACAAGCTTACCAAGTAAATTATAATGTT
CGCATCTATTTTTATGTATCTTTAACGATGATACAACAGTGATATTAAACATACGTAATGGCCATGCTACTACTGTCTAACAGCATAACGTCATGTCAGC
CTTCACACATAAGCACACGCATACATACGTCCAACAAGCAAGTACCAGCGAGCATTCTCCCAAAAGTTTTTCTTCTTAGAGGCGGGGTAATTGTCACGCC
TAGAAATTCCCGAATAGAATTCCAAGCAGAATGTGCATTAAAATCCCCGTCCAGGACCGGCCGGGGTACACAAGTGACAAAGTTGACATACAGATCCACG
TCTTACAAACATTATAAAAGTCTTACATAAATGCAGCGGAAAAAAAACAAAGATAACTGGAGCTAAGCCTTGACTTGGACTGCAGCGGGAACACCACTCC
ACAGGCATCCTCGACGGCACGGACAAAGCCTACTCCTCAGAGAAACCACCATCTGACGCATACTCAAATTCTGGGGTTTGGGGAAAATAGAGCAAGACTG
AGTACTACCTACTGTACTCAGCAAGTCATACCTGAAGATGCACTTAAACCCCTAGTGGGTTTTGATGATTAATGACAAGGTGGTTAATGGGGACTAACGT
GTTTATCAAGTTTATTCACAGGAGTTTAGTCCCAAAGCAAGTTGTGATGGCTAAGAATGCAAGGAGACCCCCCAATTTGAATGTTCCTAAGTGCGAAAAA
CACCGAAGGTGATTAGACTAGGTCTTTCACTTTCGAAATTGAGTTTAGGAAAAACCGTACTATAAAGAGGGGTTTCAAGTGTGGTTCTAGGGTATACAAA
GTGCTCTGAGTCATATCCATGAGTCTAAAGGTTTTTGGAATCTTTTTTGGAAATGTTTTTCCCCGG