CANTATAdb - search

Detailed information on CNT30576547

BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30553753	Oryza barthii	Oryza glaberrima	65.39	60.44	100	359	forward

Expression of CNT30576547

Peptides detected in this lncRNA

>peptide 1 (37 aa)
MLEELSRIIEGLKVPNDIDRHWDGSSTLELQIIIAHY*

>peptide 2 (39 aa)
EEIDNPAAATNPSRHHPNRCCAVAAGLAIAVQRHSCSTP*

Sequence

>CNT30576547
GGGAAGAGATCGATAACCCTGCAGCCGCTACAAACCCTAGCCGCCATCACCCCAATCGCTGCTGCGCCGTCGCCGCAGGTTTAGCCATCGCCGTCCAGCG
CCACTCCTGCTCGACTCCTTGAGAGCAGGAGTTTCAGGAAGCGGGGAAAGCAGGAGGAGAAAAGAAGGAAAAAGGGAAGAGAGGCAAAAGTTGGGGATTT
TCTGGGTTTTCATAAATTGATCTCAAATTCGATTTCTCCTCTGTAAGGGTGTGGAGGGTTCCAATGTTGGAGGAGTTGAGTCGGATTATTGAAGGACTTA
AGGTACCTAATGATATTGATCGGCATTGGGACGGGAGTAGCACCCTTGAACTACAAATTATTATTGCACACTATTAAAATTTAGTTTTAGATTATGTTTC
TACTTAGATAAGTTTTGCGTAGAACTTATGAAGGTCATTTAAAGTTCTGGTCCTTATTTTCACGTGGAATTTGTAGAGCTAGGATGGGTTGGATTGTGTG
GTTTATATCGTTATTGAGTTATTTTATAACTGCCTATCGTGGATGTCTG