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Detailed information on CNT30576532


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30693401Oryza barthiiOryza sativa58.253.7998.99497forward
CNT30551144Oryza barthiiOryza brachyantha16.8621.8285.42144forward

Expression of CNT30576532

Peptides detected in this lncRNA

>peptide 1 (76 aa)
MTTLLWLAPASTIQYCTWIVFPRPRHPETRLLLLLLLQQHNSGTHTAGAGWECTGKISCCYCYYTLGSRMCLLLQY*

>peptide 2 (58 aa)
MHDDVVVASTSIDDTVLYMDRIPETQTSRNQATIAAATTTTQLWYTHGRRRLGMHREN*

>peptide 3 (52 aa)
MRCTAACHGCLISWYILRLLDLTYVLSGKFFPFKLHQYIKYRLYLDPINLIK*

Sequence

>CNT30576532
CGCAGGTTGTACATACAAACTCTTAACTAGTTTGCAGATTAATTTAAATTAATCTTGCAAACTGAGGAAGGATGCATGATCGATCGAGGAGGTGATGGGG
AAAGCTAGAAGACAAAGGTAGCAGGCAGCAAGAAGGTGGTGATCAAGAAACAAGAACGATGGATGGAATGGATGCATCGACTATGTCCGGCGTGAACACA
CTCTCTGACAGATATTAACTTTGTCAACTTTGTCGAGCCATGCAGCAGGATCGATCGATCGAGGAGAGGAATGAATAGAATCAATCAATTAATTATTGGC
GCCGTGGAGGATCTAGGAGATCGAAGATCCATGCCATTGCATGCATGACGACGTTGTTGTGGCTAGCACCAGCATCGACGATACAGTACTGTACATGGAT
CGTATTCCCGAGACCCAGACATCCAGAAACCAGGCTACTATTGCTGCTGCTACTACAACAACACAACTCTGGTACACACACGGCAGGCGCAGGCTGGGAA
TGCACAGGGAAAATTAGCTGCTGCTACTGCTACTACACCTTAGGAAGCCGTATGTGTCTATTGCTGCAGTACTGAAGCTGCACACAACACATGCGATGTA
CTGCCGCTTGCCACGGATGTTTGATATCCTGGTATATTCTCAGGCTACTTGATCTTACGTATGTTTTGTCTGGCAAGTTTTTTCCTTTTAAACTACATCA
GTACATTAAGTATCGCCTTTATTTGGATCCAATTAATTTAATTAAGTAGGAGTACATGCAGTTGAGTTTTCAGACCCACTTTAATTTGTGAGAAATGATT
GCCTGTGTCCGATCCCAAAATTTTATTTATAATATTTATTATGAAGTTTTGCAC