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Detailed information on CNT30576509


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30596238Oryza barthiiOryza meridionalis38.7324.0591.3299forward

Expression of CNT30576509

Peptides detected in this lncRNA

>peptide 1 (55 aa)
DIALIRLFRILIHSSLLSLSLSLTLPPHCCDQHPSLSILHQECVRPRPWVVVHQG*

>peptide 2 (30 aa)
GHCSHPSIPHPYPLFPPLSLSLSDSSTALL*

Sequence

>CNT30576509
CGGACATTGCTCTCATCCGTCTATTCCGCATCCTTATCCACTCTTCCCTCCTCTCTCTCTCTCTCTCTCTGACTCTTCCACCGCACTGTTGTGATCAACA
CCCCTCTCTCTCGATACTCCACCAAGAATGTGTCAGGCCACGGCCATGGGTTGTAGTTCATCAAGGCTAGAGAGCTAGAGAAAGACAATGGACGGGCGTA
GTTGAGGGACAGAACCGACAATGACAATGTGACAAAGCCTTTGGGGGAGCAACGGCTATCCGCTGCTGTGGAGTAGAAGGGTCCTGCAACGTCTTGGCAT
GGATCTGCAGCTGAGATTAAAGGAGCCGGTGGTCATCGAATAGGAGAAAGAAGCCATATCTAAACTGCAGCAGCTGCGCAGGACGACTTGACCAAGAAGT
GATGTTACAAGTCGCTCAAGGAACGTAAGGCTCATCCATTCATCCATTCATCCGTTGACAAACTTGACTATCATGTTCAAAGGATGATATCATGTTAAAA
ATAATATCGTCTTGCTCAAGAATGAAAAAGACTCCTTTCAACAATAATTATGGAGGACCAGTTTGAAAGGCTCAACGGATAAATGAAGGATGGGTGATGG
ATTATTTATTAATTTTGTGATATTTGTGGGTACAAACAAATGGATTAACTATTATAAACTTGCAAATTTGTTGTAAAAAAATTGTTCCAAGTAATTTAAG
AAATAAATTAGTCTAGGTGCTGCACTAGTGTGATTTTAGTCTGATGCGCATGTACCGGTGACAAAATGGTTG