Detailed information on CNT30576374


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30382729Oryza barthiiTriticum turgidum8.5925.3581.48162forward
CNT30553755Oryza barthiiOryza glaberrima41.1556.77100776reverse complement
CNT3067525Oryza barthiiLeersia perrieri37.4984.2786.14707forward
CNT30596287Oryza barthiiOryza meridionalis16.760.4698.41315reverse complement
CNT30370349Oryza barthiiOryza glumipatula41.155099.74776reverse complement

Expression of CNT30576374

Peptides detected in this lncRNA

>peptide 1 (29 aa)
MGLCLAKQETSGLIACILVTRRCMEFQSK*

>peptide 2 (75 aa)
MKNELKGNGTMGDLKVMPQPLGHSSLHKANITTRVSEEAHTPLPRSLLLLAATFILLQHTTNHQEICSLIFLCQC*

>peptide 3 (46 aa)
MLPCFTFPKNMCQIIKRQLIAGLSHTDTQHVSPNVCYYLNSNAEPE*

>peptide 4 (49 aa)
MGKVCCTEESEEEAAFNLMGLLVAAIIALVLMLICTPPRRRSVTIYPCC*

>peptide 5 (30 aa)
MRCVSQGTKCSHQQMLINLVLFPGLQSLKK*

>peptide 6 (37 aa)
MKNQICWSKPNTLHLSSSNWSSQKFHPRAVLVALGGC*

Sequence

>CNT30576374
GTGCTAGACTGCTAGTACTACTAATTAACATGAAAATTAACAACAAATAGATTCAAAGCTGCCCTGATTCCAAACAATAGAAACCCTCTCCCTGTTCCCT
TTTTAGTTCTTTTGGCTTCTCCTTTTGGATTCTAATGGAGCTCCAGATCAGATGCAAATTAGTTTATCTCGCATGAATTCATCAGTGTCCAGCTGAAATG
GGACTCTGCTTAGCTAAGCAAGAAACTTCTGGCTTGATTGCATGTATTCTTGTCACAAGAAGATGCATGGAATTTCAGAGTAAATAAATAGATAGATACA
AGAGCTGCATTGGAACAAGGCATGTTGCCATGCTTCACCTTCCCGAAAAACATGTGCCAGATTATTAAAAGGCAACTCATTGCAGGTCTAAGTCACACCG
ACACACAACATGTGTCACCCAATGTATGCTACTACCTAAACTCAAATGCTGAACCTGAATGAGATGTGTTTCACAGGGAACGAAATGTAGCCATCAGCAA
ATGCTAATCAACCTTGTTTTGTTTCCAGGACTTCAATCACTGAAGAAGTGAATTACTTTTCAACAGCCTTCAGAAAGTAAGATCTCTGAACTTTTGCAAG
TTCACCAGGAGTATCATCAGTGCATCCAGTGTAGTTTTCATCTCATCTCACCATCAGCAACCATCATCGAATTGACTGCGACAAAATTGCCAGTAGCACA
ACTGACAGTGAAGAAGGTGAAGGATCTCAGATCATTCATACTGAAAGAAAGAATGAAAAACCAGATCTGTTGGTCAAAACCCAATACTTTACATCTGAGC
AGCAGCAACTGGTCATCCCAGAAATTTCATCCCAGGGCAGTGTTAGTGGCCTTGGGTGGGTGCTGATTGGCTGGCTGAGCTGTCTCCTCACCATCTTGGA
AGATGAAAAATGAATTAAAAGGGAATGGCACCATGGGAGACCTGAAAGTGATGCCCCAACCACTTGGCCATAGCAGTCTCCATAAAGCAAACATCACAAC
CAGAGTTTCAGAGGAAGCTCACACACCTTTGCCAAGAAGCCTTCTTCTTCTAGCTGCCACTTTCATCTTGCTTCAACATACCACCAATCACCAAGAGATT
TGTTCTTTGATCTTTCTCTGCCAGTGCTGACATGGGCAAGGTGTGCTGCACCGAGGAGTCCGAAGAGGAGGCCGCATTCAACCTCATGGGGCTTCTCGTC
GCTGCGATCATCGCCTTGGTGCTGATGCTCATCTGCACACCGCCACGGCGGCGCTCAGTCACCATCTACCCTTGCTGCTGAGGTGGAGGAGTACCTGCAG
GACTGTGAGTCCTCTGATGGGAGAAGCTTGATTGCTTCTCTGAAGAATCAAAGATGTGCAGGGTGAAGGTTGTTGGAGAAAGCAGGAAGGCAAGGCATTG
GCTCCTGATTTTTCAAGTTAAATAATTGCTTAATTGTAATGCATCCTATTGTAAGTCATGTTTATTGGTATAATAGTCTCTTCATCTTTAGCCTGAATTG
ATAGCTTTGGAAATATATAGATGCTTGTCAAATCTGTTAAATGTATGATATGACTTGCTAACCTCCTACTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCT
CTCTCTCTCTCTCTCTCTCTCGATTTTGACGTGATCACGACACAGAAGCACAGGAACTGGTTTATCCTCAGATAAAATGTAATTAGCAAAAAAGACAGAT
TTATTGTTCTTCCCTTGCTGTTAAGTCATTAAGTGTTTCTTTAGTGATCCCCATAAAGGATGCACATTTTTTGTGGCCTAGTGTAACTTCCAATAGAAAA
GCACTGAAACAAGTAGGAATATTAAATGGTTTCACTTAGATCCTAAACTTCCGGGCAGATCTCAAAAGTCTACTGTCAGTCTGAAC