Detailed information on CNT30576322


BLAST search results

BLAST vs Swiss-Prot:
sp|Q8GZ99|HPCA1_ARATH, E-value = 2e-12

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30693405Oryza barthiiOryza sativa96.386.2699.73364forward
CNT30104888Oryza barthiiOryza longistaminata10033.72100378forward

Expression of CNT30576322

Peptides detected in this lncRNA

>peptide 1 (39 aa)
MCMRVILELKSPVSVPVNWFLLKWLFINLKFGAKQSIAW*

Sequence

>CNT30576322
GTCCCAACCTCAGCTGGGATTGAGCCTGAGAATTTGTTGCTATCAAACAAACTGACGAGATAGGGAGAGATGTTAGCAAGATATATCTATTCAGTATTCA
TATTAGACATGAAAATTTGTCGATCCCTTACATGTGTATGAGAGTCATATTGGAGTTGAAAAGTCCAGTAAGCGTTCCAGTTAACTGGTTCTTGTTGAAA
TGGCTGTTCATCAATTTGAAGTTTGGAGCAAAACAATCAATTGCCTGGTGATGTTGATGTTGAGATGGGGACAGATCCAGTGAGTTGATTATCAGCCAGG
TCTAGCCATAAGAGGTTTGTGAGTACGCCAATCGAAGACGGTATTCCACCACTAAACTTGTTTGAATTCAAGGCCCTA