CANTATAdb - search

Detailed information on CNT30576148

BLAST search results

BLAST vs Swiss-Prot:
sp|Q9LNC5|CLO_ARATH, E-value = 3e-26

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30149525	Oryza barthii	Brachypodium distachyon	21.28	38.41	89.66	116	forward

Expression of CNT30576148

Peptides detected in this lncRNA

>peptide 1 (91 aa)
MRDQKGFFLELVLEIRERGHLLLETLPLADVQHQLVRLRAHLQRIRSHHVPVIKDTLREGLARCRGAELAREPKRLDDGEVSLDVVQRGTR*

Sequence

>CNT30576148
CACAGCACAACACTACCAACACCGATACTAGATGTGTAACAAACACATCATATTTCTGACTTGTCTTGTAACTCTTTAACAATAGTAGAAGAGCTATTAG
AACAGGTAAATTAATGGCAAAAACATATGCGAGACCAAAAGGGTTTTTTCTTAGAGCTTGTCCTCGAAATCCGAGAGAGGGGTCATCTGCTCCTTGAGAC
CCTTCCTCTTGCGGATGTCCAGCACCAGCTGGTTCGCCTGCGAGCTCACCTCCAGAGGATCAGAAGTCATCATGTCCCAGTGATCAAAGACACACTGAGG
GAAGGCCTGGCCCGATGTCGCGGCGCGGAGCTGGCTCGAGAACCCAAACGACTCGATGACGGGGAGGTAAGCCTTGATGTTGTACAGCGGGGTACCAGGT
AGACTGGCTCCAGCAGCCTTGGCTTCGCAGTGAGCTGAGAAGCATAGATGACCCTCCTCGCTGTCGGAATGACCTGGCCACCACCCCTGTGAATAGCATC
AGCGTGGAGAACCACATCACATACCTCGAAGCAGATGCCGCGCAT