Detailed information on CNT30576066


BLAST search results

BLAST vs Swiss-Prot:
sp|P0C2F6|RNHX1_ARATH, E-value = 6e-07

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30369340Oryza barthiiOryza glumipatula56.0398.7999.282213forward
CNT30106816Oryza barthiiOryza longistaminata3.9220.8184.52155forward
CNT30104083Oryza barthiiOryza rufipogon7.5722.4382.94299forward
CNT30603966Oryza barthiiOryza punctata3.1640.4584.8125forward

Expression of CNT30576066

Peptides detected in this lncRNA

>peptide 1 (36 aa)
MNDCRLRAAEIYLGRTVNLRDCLGCNTIVKCSETDS*

>peptide 2 (34 aa)
MVRCRLYRICTVESNIQAKVVYLTVCVFIQNMHC*

>peptide 3 (42 aa)
MHVQLNIDTGFSLMNCILWIITHDPPYSNLFFCFFWQSPHGK*

>peptide 4 (40 aa)
MDIFIYKTSKEYSLAQFIDHKQGIYFSRIYRSSCMSMQYA*

>peptide 5 (48 aa)
MILHTQIFFSVFFGSHPMVNENCIFFLSFYLNSFFFLKWKRQKVCRLY*

>peptide 6 (43 aa)
MTCNSQVCCQRYHIENSITREFAWFTVLLNRSRDLEGKKRGDD*

>peptide 7 (53 aa)
MRNTGSGMDPMNCARYALCTENKPVLPIVQVISSSRFSCSTIWFSTDPRCTSS*

>peptide 8 (49 aa)
MYNVRILTSPAFPSSEVLQRVKMNYLYIRLCYLCCHVATAISHICIKEF*

>peptide 9 (29 aa)
MPPSLDENPPLLILLPPWNKKKQLCAAIV*

>peptide 10 (74 aa)
MRGAREPAFKSSLITTDQWLLAPLDLAESMRKNRGRLGRKGALPTRVLPPDPAGRQCLSTPTTAPSATPITVSE*

Sequence

>CNT30576066
GTGACGCCTCCGCCCCGCGCGCCGGCCCGCCTGTGACGCGCTGAGACGGGGCGCCGTCGAGGTTTGGCCTCGCCGCCGCCATCCCGGCTGGCCGCTCGGT
TCTCCGGCGGCGGGCTCCGGCGGCGGCGAGGGGAGCGAGAGGAGGAGAAAGTGGCGGCGGCGGCGCTAGGTTTTCCCCCGTGTCGCCCGCGCGTGGGCGA
TGCGGGGGGCGAGAGAGCCAGCTTTCAAGAGTTCACTGATCACTACCGATCAGTGGCTCCTAGCTCCCCTGGATCTGGCTGAATCGATGAGGAAGAATCG
AGGACGCCTGGGAAGAAAAGGGGCATTGCCAACGAGAGTCTTGCCGCCGGATCCGGCGGGACGGCAGTGCCTATCCACGCCGACGACTGCGCCTTCCGCC
ACGCCAATCACCGTCTCAGAATGAATGATTGCAGGTTGCGAGCAGCCGAGATCTATCTCGGAAGGACTGTCAATTTGCGAGATTGTTTGGGCTGCAACAC
CATTGTGAAGTGCAGTGAGACTGACTCTTGAAGATAGATTACTGAAGAACTGAACTCTAATTGTGAGTACTTGTGAAGTTTCTGTTCTTTTAACTCTGAA
AGCTTTTGTGCGACCTGTTTGTGTAGAAGAATTAATTAATAATTGAATCTTTACAGCTGAAGCAATTAGGAATCTGAACAAATAAAATCTTTTTAACATA
TGCATCTGCTACACTTGATTGCTATCAATCTGAAATTTCTGTTGGATCAACATTTTTAAGGTTGAACTTTTGGATTTTCAACCATGGTCAGAAACTGTAA
GGTTCTTAATATTCTAATTGGGTGCATTGAGCATTGGCGCATGGGAACATAACAAAAATTCTTGGCTACAGCTCACTTCTTGGTTTGTCTATTCAACGTT
TCATTATTGAATCTGAACTTTTCTCTGAAATATTTTCATTTCCTTTCAACAAATTAAATGATGTTTAATAGATAGAGCAGAGAATGGTCAATATAAAGTT
CTCCTGCATGACAACTAGACATGATATGAAAAAAAACCCAGTTTCCCTATTGTTTTGCTCTGTTAAATAAAGTCTTAGAACTTGAATCGAGCAGTTTATA
TCATGTTCAGTATTGTATCAGTTGAAGTAGTATATTAGAAGTTGTGCTCATTTAAAGTGATAATTTATTGCTTTAGTCTTGTGCAATTATACTCTTGTCA
TATTTTTTCCCTTTAAAATGTATAATGTACGGATACTTACATCCCCTGCTTTTCCTTCATCGGAAGTCCTGCAGCGGGTAAAAATGAATTATTTATACAT
TAGATTGTGCTATTTATGTTGTCATGTAGCTACAGCCATCAGCCACATATGTATCAAGGAGTTCTGATATATATGAAGGTTGAAACATGACTTGTAACTC
ACAGGTTTGTTGTCAACGGTATCATATAGAGAATTCCATCACCCGTGAATTTGCTTGGTTTACTGTTCTTCTGAACAGATCCAGAGATCTTGAAGGGAAA
AAAAGAGGAGATGATTGACAGTCTAAAGGACATATAGTCCTAAGGAGCAATTTACTACTTCCTCCGTTTCACAATGTAAGAATTTCTAGTATTGCCCACA
TTTATATGAATGTTAATGAATCTAGACACATGAATATTTACATTCATTCACATCTTTATGAATATGGGCAATGCTAGAAAGTCTTACATTGTGAAACGGA
GGGAGTAAAATTATAAAGACTAGCCTCAAGTATTTCACATGTCAAAGCCTGAAAAGCTATAACCTAATGGTTCATTCATGGATATTTTTATTTACAAAAC
AAGCAAGGAATATAGTTTAGCACAATTTATAGATCACAAACAAGGAATATATTTTAGCAGAATTTATAGATCCTCCTGCATGTCCATGCAATATGCTTAG
GGTAATTTGAGATTGAGCATCTCCATGCTGCTGCTTATTTGTCTTATCTTGAGGTTTACATTTTTGAGATCTGCTCGTGGCTAATTGAGAATCTTTTTGG
AGGTATATGATCTGATCTCTTCCCACCTATGATTAGTCTTTTTGGATCTGCCATGTAAGTACTATATTCATGCTTGCTTGATGTAGGTATCAGTTAACCC
ATATTCTTTATCAACTTGTAACTAATTTAAGCTCAATTGTATGGTTCGCTGCCGTTTGTATAGAATATGCACTGTTGAATCAAATATACAAGCCAAAGTT
GTTTATCTAACAGTTTGTGTGTTTATACAGAATATGCACTGTTGAACTCTTGATGAACTTTACTTTCTAATGTTGATCGATCAAATTTAAGTATGGAGAT
CCTCCGCTTGTCGGCTAAGTAATAGCGACAAGCTAGGGATGCAAATGGTGTTTTGTTCTTTGGATCTCAAGCCCTACTAACTGGTTCTCCAGCTGAATGT
GTCGCTATGACGACTGCAGCTTGCCAATGAATGGCTCCCTCATCTTTCCATTAACTTGAAGAATTCCGCACAGCCGCAGAGGTAGGATGTTTTGATAGCA
GGTGCTCAACTAAAACCCTAATGGAATCCATCTTTTGGCTTTAAATTGATGTTCAGATCTGACTTTTTTGCGCGCAACATGTAGTTGGGGATTTTAACGT
TACTGAAGTGTTTTTTCATTGAACTTTGATCAACCAAAGAAACTGTATTACACCAATATTCATTACCTGTTAGTCTGAAGCGGAAACTGAATTAGATTTC
AGCAAATGCGGATGTAGAACTATCCAATCAGATCGATCGAGCACAATCTTGCAAGATTGTGAGATAATGCATGTACAACTTAATATAGATACAGGCTTTT
CTCTGATGAACTGTATTTTATGGATCATCACCCATGATCCTCCATACTCAAATCTTTTTTTCTGTTTTTTTTGGCAGTCACCCCATGGTAAATGAAAACT
GCATTTTCTTTCTTTCCTTTTACCTAAACTCATTTTTTTTTTTGAAGTGGAAGCGGCAAAAGGTTTGCCGATTATATTAGAAGATTAGAGAAATATTAGC
TGTTTAGCTAGTACATAATGCACATATTACAACTTTAAAGGCAAGCCCTGTAGCCAATAACTGGGCTTCTACTAGATAGTGGAGGAGGAAATTGATTGCC
TACAACTTATGGGGGCTTGAACACCCACTCTTGCTCCTTAATATTTTCAAGGATAAGGTATGCCGCCTCTTGACAGTTTGGCTCCTGATCACGGAAGATC
TTTGCATTTCGCTGCAGCCAGATATGCCACCAAGTCTTGATGAGAACCCCCCACTCTTAATCTTGCTTCCTCCTTGGAACAAGAAGAAGCAACTGTGCGC
AGCAATTGTCTAGCTGAGGATGTGTCAAAGCTTCCCGTGATGGCCATAGCCGATGCCACCCGTTGCCAGGTCTGCTTGATGAAAGTGCAGTGGCAAAATA
GGTGATCGGTGTCCTCAAAGGCTTCCCGGCATAAGGAGCAGATCCAATTGCAACTCCAATGTCTTACCATAAGGTTTTCCGCTGTTAGGGTCCTTTGGTG
TAAAATTAGCCATCCCTAGAATTTTTGTTTTGGGAGCGCATTTGCTTTGCAGTTTATGAGGAACACCGGGTCTGGTATGGATCCAATGAACTGTGCACGG
TATGCACTCTGCACAGAAAACAAACCTGTGTTACCCATTGTCCAGGTGATCTCATCTTCTCGGTTTTCATGTAGTACGATTTGGTTTAGCACGGATCCAA
GGTGCACCAGCTCATGAATCGCTTCGACGGTCGTGATTTGTCTGAAGGAGTGTAGCCAGTTATTAGTTGATAACTCTATACCCAATTTTCTGTTTTTTCT
TTTTGCCAGAGCAAAGAGCGTGGATTTATTCTATCCCCTTCTTATATTTTATAATCTAGATATATTTTATACGATCCCCTTCTTATATTTGTAGCTTAGC
TAATAGTATTTGTAAACCACTGAAATACAATGGAAATAAGCCAACGTGAT