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Detailed information on CNT30576046


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30370011Oryza barthiiOryza glumipatula46.7894.1796.56582forward
CNT30116435Oryza barthiiOryza nivara81.3582.3497.231012forward

Expression of CNT30576046

Peptides detected in this lncRNA

>peptide 1 (33 aa)
MFMRLFMPFRFQVYLMFRTLFLFSIFQILILVK*

>peptide 2 (41 aa)
MWRRLARARRRPVDKRLMCRDLVWRVLPRVTVKVKGNCTTN*

>peptide 3 (46 aa)
PPHSSPLLPLNRPDGDPPVAAACGGGRRREVASGEGSSGRRVAAGW*

Sequence

>CNT30576046
TTCCTCCTCATTCATCTCCCCTTCTTCCTCTCAACCGACCTGACGGCGACCCGCCGGTAGCAGCGGCGTGCGGAGGTGGCAGGCGGCGGGAGGTGGCCTC
TGGTGAAGGTAGCAGCGGCAGGAGGGTGGCGGCAGGATGGTAGGCTGCGGCGCCCTCCGGTGAAGGCGGCAGCGGCGACCGCACCCTCCCTTCCACCAGA
TCCCCGGGGGGAGGGGAGGCGGTGACCCGGCGGCGGCGGCCGTGGGTAGCCGTGTCGGCAGTGGTGGTGGAGACTGGCGCAGGCGAGGTGGCGGCCAACG
GCAGCCGCCGGATCTGGCGACAACGGTAGCGCTGCATGTGGAGGAGGCTGGCCCGGGCGAGGCGGCGACCGGTCGACAAGAGACTTATGTGTAGAGATCT
GGTGTGGAGAGTGTTGCCTCGAGTTACCGTCAAGGTTAAAGGCAATTGCACGACAAACTAATTATGTGATTCATGGATTGTTTGCTCTATCTATTTATTT
TCATTATTTTCTATGTGATATGTGACTCTTATGTTCATGCGATTGTTCATGCCATTTAGATTTCAAGTTTATCTAATGTTTAGAACGTTATTCTTGTTTT
CAATATTTCAGATTCTGATTCTGGTTAAATAATTTAAGTTCCATGCTTGCTGTTGGCGGCTGTTAAATGTCGATTCTATACCGCCAACATCTGTATAAAG
TTCAGATAATAAAACAACCAACATAGTGATAGGTGCTTAATCTCACATATTCCACAAGTGTTGGTGTATATTTGTATGCAGATGATAAACCCTAATGTTG
AGAGGAAATCTAGACTAAAGTGAGGAGAATTATGTATCCATACAAGGAGGGGTTGTGAACTTCATCAAAACATCAGCGAATCAATCCAAAACTCCGAGAA
ATGGACAGAGGAGAGCCTAGGGAGTCCGCAGTCCGAAGGCCAGGCCAGGAGAGCCCATCATAGGTTCGCCCGAACCCCCTGGATCGGCCGAACCCCCCTG
GTCGCTGTTGATCCTGGGGTTTGGCGTGGACGCTCCAAATGCTCTCCCAATGACGGTTGCGGGGCAGTTCGGACATTTCCCCTTCTCACAACCGTCATAA
CTGCCCTATAAAAGGACATCACTCCCTCACTTCACACACACACTTCCAAGCTTGAGCTGAATTATAAGAGACTCTATTGTACTATATTGTATATTAGAAT
AGGAAGAGAGTAGAGTAGGAGTTGGAAGAATTCCGGAGTTGTCG