Detailed information on CNT30575698


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30187165Oryza barthiiSecale cereale15.4756.1393.28119forward
CNT30393404Oryza barthiiTriticum turgidum28.6118.7992.27220reverse complement
CNT30595820Oryza barthiiOryza meridionalis41.3510.4789.94318forward
CNT30369884Oryza barthiiOryza glumipatula30.0420.1992.21231forward
CNT30574572Oryza barthiiVitis vinifera21.592.4790.96166reverse complement
CNT30109079Oryza barthiiOryza longistaminata29.2627.6892.89225forward
CNT30550605Oryza barthiiOryza brachyantha20.0317.0589.61154reverse complement

Expression of CNT30575698

Peptides detected in this lncRNA

>peptide 1 (81 aa)
MVQKLPDLNLIFYQIIYIGNPSIFHKEHMFLFLYGFRYVANPIAHPLSSRFDIYYKIENPLHNHVSARQRVEWPGADQMDI*

>peptide 2 (40 aa)
LFFPLLCIGIRGKISTVGLQLYGPKIARFEPNFLSNYIYR*

>peptide 3 (30 aa)
MENNFHVHREQFFSLRISPSHIQVCNSGPV*

Sequence

>CNT30575698
CTTTTTTTCCCACTCCTATGTATAGGAATAAGGGGTAAGATCTCAACCGTTGGATTACAATTGTATGGTCCAAAAATTGCCAGATTTGAACCTAATTTTC
TATCAAATTATATATATAGGTAATCCCTCTATTTTTCACAAGGAACATATGTTTCTCTTTCTCTATGGATTTAGGTATGTAGCTAATCCGATTGCCCACC
CACTTAGCAGCAGGTTCGACATCTACTATAAAATAGAGAATCCACTTCACAACCACGTCTCTGCTAGGCAGCGTGTGGAATGGCCGGGAGCGGACCAAAT
GGATATATAATCCAAGCCGAGAGTGGAGTTACGTGAACAGCCGTCTGATGGAAAACAACTTTCATGTTCATAGAGAGCAGTTCTTTTCGTTGAGAATAAG
TCCTTCCCACATACAAGTCTGCAACTCAGGGCCTGTTTAGTTCGCGAAAAGAAAATTTTTGGGTGTCACATCAGACGTTTGACCGGATATCGGAAGAGGT
TTTCGGACACGAATGAAAAAACTAATTTCATAACTCGCCTGAAAACCGCGAGACGAATCTTTTGAGCCTAATTAATCTATCATTAACACATGTGGGTTAC
TATAGCATTTATGGCTAATCATGGACTAATTAGGCTCAAAAGATTCGTCTCGCGATTTTCCCCCTAACTGCGCAATTAGTTTTTTTTAATTTATCTATAT
TTAGTACTTCATGCATATGTTCAAAGATTCGATATGATGTTTTTGAGAAAAAAATTTTGGAAACTAAAC