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Detailed information on CNT30575676


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30692067Oryza barthiiOryza sativa56.5399.3698.87619forward
CNT30369951Oryza barthiiOryza glumipatula6110099.7668forward
CNT30105375Oryza barthiiOryza longistaminata62.83102.8495.64688forward
CNT30100935Oryza barthiiOryza rufipogon52.5110099.48575forward

Expression of CNT30575676

Peptides detected in this lncRNA

>peptide 1 (30 aa)
IMEQIPQEKQIHKVLDLHALSLCPTIKRLN*

>peptide 2 (46 aa)
MRLFCPGRLINPRTTQRDDAGDEVSHPSSPIKSCFSCSLLAPSHTT*

Sequence

>CNT30575676
ATAATGGAACAAATTCCACAAGAGAAACAAATCCATAAAGTGTTAGACCTGCACGCTCTTTCACTGTGTCCTACCATAAAACGATTAAATTGATTGATTG
GAACGGCCACTGGTCTCTCTTTCCCCTCCGTAAATTTCTTGCTCAGTTCAACTAATCTAGCAGCTGCGTGGCTGTGACTGTGAGCCACCGAAAGATCCAA
ACGCCACCACCAAAACCAAACCAAGCAAAGCCCCTCTCGATCTCCGAATAATCTCGCGTCTCTTTTGCGCCTTTTCTTGTACTTCCCTTCGCTTGCTCGC
CTTTGAATTGATCCATCAACCACAAAAAAGAGAGGAAGAGAAAAATTTTGCAGTCTCCATCACTCCTGCTGTCCCATGCGATTATTTTGTCCCGGTCGTT
TGATCAATCCAAGGACAACTCAACGAGATGATGCTGGTGATGAGGTGAGTCATCCTTCCTCTCCTATTAAAAGCTGTTTTTCTTGCTCCCTCCTCGCTCC
CTCTCACACGACATGAGCAGCCCTAGATCGTCCGGGGTTGGAGCAAGTGTTGTGAGATCAAATCTTGATGGTCATTATTAGCTGAAAAGGATTGGATTTT
TACCGCAGAGACAGTATCTGAGCTGTGTTTCTCAGTGCCTCCCATGTTCTTGCACCAACCAAGCTAGAACTTGGAAAGGAACACCACCATCACCAATTTG
CAAGAGAAGGTTCTCTCCCTTGTATTATAACCACAACTATATTGATTCGAGATTAAAGAGAAGGGCACAGTGAGGATACTGGCATTTGGAGGCTTGTTGA
ATCCCAGGTGCGTGTGCCACCTCTCCCGAAAGGCCAAAAAAAACCACTGCTGCGAGTGCGAGTGTGCAACTTTCCTGCAAGAAACAGTGAGCCGAACACA
CCGGCTCTGTTCTTGGCTAATTAAACCCCAATTGCGGCGCTGTTTGGATTCAGTTCTTCGCAATTCTTGGATTCCCCAGCAGCAACTGTTCTTCCCCAAC
CGAGAGCCCAAATCTTTGATCCAAAACTTTGAACCAGATAGAAGCCATGGTTTCTCGGTCCTACTCCAACCTGCTGGACCTGGCCACCGGCGCGG