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Detailed information on CNT30575121

BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30552520	Oryza barthii	Oryza glaberrima	69.25	36	100	509	forward
CNT30345961	Oryza barthii	Eragrostis tef	6.94	21.16	90.2	51	forward
CNT30108659	Oryza barthii	Oryza longistaminata	69.25	74.31	99.61	509	forward
CNT30150571	Oryza barthii	Brachypodium distachyon	32.65	29.81	85.42	240	forward
CNT30100206	Oryza barthii	Oryza rufipogon	82.04	40.91	99.83	603	forward

Expression of CNT30575121

Peptides detected in this lncRNA

>peptide 1 (40 aa)
MRAITVVKKILVAVYDGFLQYDLCCFHRQAMHCVKKGCEN*

>peptide 2 (35 aa)
MHMVERSTFQRPFLGRTLFAQRLQLVGQSGRFEFQ*

Sequence

>CNT30575121
AGACCATACACGACAGTCTGGAGGAAGATGTGTGGTATCTCAATAAGAACCTGTTGAAAGGATAAATTGTTAGATTTTTTTTCCGTATAATAAAGGAAGC
ACACTGCAATTGTTTTTTTGTTTAAATATGCAGCTATGACCATTTACCTGCGCAAATGCATATGGTAGAGCGGAGTACATTCCAGCGGCCTTTTCTCGGT
AGAACACTGTTCGCTCAACGTCTACAATTGGTTGGACAGTCTGGCCGTTTTGAATTCCAATGAAAAGGACTGCTGCATACATGGATCCCAAAGAGTTGAA
CAGATCCAATCTCTTGTTTCTGTAGGCAAGATAAGCACAGGTTCAAGAATATAGTGCCGAAAATGAGGGCTATAACTGTTGTGAAGAAGATTCTAGTTGC
TGTATACGACGGATTTCTCCAGTATGATTTGTGCTGCTTCCACAGGCAAGCCATGCATTGTGTGAAGAAGGGCTGTGAAAATTGAGTTGGGAAGTGCAGG
TCCGTTGATCCAGGTGGAGGTGTGCTTAATTCACTTATCAATGTTTTATTCCTCCTGCAATGGTGCAATTGAATCAGTGATATAACACAGAAAAAGCAGA
AAAAGAACATTTTGGGGGGCTTTTGTCATGAAACATACTGGATTGTAACCATCCTTGATTTTCCTCACTCCTTGTATACCCTAAATTTGGAGCAGCGAGC
AAGGTTACCATGCATGTCTTAAGTTGGAAATTTGG