Detailed information on CNT30574974


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30690060Oryza barthiiOryza sativa59.2925.2100249forward
CNT30552389Oryza barthiiOryza glaberrima78.3310099.7329forward
CNT30369298Oryza barthiiOryza glumipatula81.4375.83100342forward
CNT30115689Oryza barthiiOryza nivara36.6747.2499.35154forward
CNT30603466Oryza barthiiOryza punctata73.8181.7996.45310forward

Expression of CNT30574974

Peptides detected in this lncRNA

>peptide 1 (33 aa)
MMSMNSGYRTKKGRRYSVNQAGNHVCTIVLLCSY

>peptide 2 (48 aa)
MILFRHLPTPKVNGVKILGGLHGGGVDDVDEFRLQNKERETVFSESGG*

>peptide 3 (70 aa)
MVVCSVVCIISIAQAAGSFREVKGRKKSSCSSTKLLALHKHRKRYDPLQTSSHAEGEWGEDLRRTSRWRS*

Sequence

>CNT30574974
TCATCAGACTGATATGCCAGCAAGAATAGGTGAAGGGACCAGTGAAATCTGATCTGAAACTCACATGATAATAACTCACGACAAAAGGAGCTAAACATTA
TTGGTATGGTAGTATGTTCAGTGGTGTGCATTATTAGCATTGCTCAAGCTGCAGGTAGCTTCAGGGAAGTGAAGGGGAGGAAAAAGAGTAGCTGCTCCAG
CACAAAACTACTAGCATTACATAAGCACAGAAAAAGGTATGATCCTCTTCAGACATCTTCCCACGCCGAAGGTGAATGGGGTGAAGATCTTAGGCGGACT
TCACGGTGGCGGAGTTGATGATGTCGATGAATTCAGGCTACAGAACAAAGAAAGGGAGACGGTATTCAGTGAATCAGGCGGGTAATCATGTCTGTACAAT
CGTTCTACTGTGTTCGTATT