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Detailed information on CNT30574900


BLAST search results

BLAST vs Swiss-Prot:
sp|A2WK50|IBBR_ORYSI, E-value = 4e-27

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30690233Oryza barthiiOryza sativa64.5184.1696.24558forward

Expression of CNT30574900

Peptides detected in this lncRNA

>peptide 1 (47 aa)
MLHICHCYSAASKALTLIERSARAPLLDASLLFTVGSYDLRLINMSS*

>peptide 2 (34 aa)
MSLLLGSKQGVNADRAVSACAPARRVALIHRWIV*

>peptide 3 (34 aa)
MLLLGVTAAEEMGMPARRRAPRVSVSRLPLFMADR

Sequence

>CNT30574900
CCAATTCTGGGAGGTGATGCGATGATGTTCTAGCTAGTACTAGTAATAAGAAGAGACCAAACAAACAGACTATTGAGAGTTGAGACTGCTACCAAATTCA
TCTTATTTATTGGACAGCAACCACAACATACTAGTACTACGTACTCTGGTCACCGAAACATTCCCTCACGATCCAGATAAAACAAACACAATAAAGAAAA
AGAAACACAATAAAGGAAAAAAAACATACGTGACCACACGAATGTTACACATATGTCACTGCTACTCGGCAGCAAGCAAGGCGTTAACGCTGATCGAGCG
GTCAGCGCGTGCGCCCCTGCTCGACGCGTCGCTCTTATTCACCGTTGGATCGTATGATCTGAGGCTAATTAACATGAGTAGCTAATTAAGCTGGCTGGTT
GTGACACTTGGGCCCCGGGAAGCCGTGGTAGCGATCGAGGCAGCGGAAGCGCGGCGGCTGCGACTCCACCTGCACGCACTTGCCGCAGCCGCCGGAGCAC
GACCTCACCTTGTCCTGGCAGCTGCACGTCGGCGGCATCGACCTTGTGCACACGGCGTCGTCGCAGCATTTCCACGGCCTCGACCTCACCGCCTCCTCGC
CGCCGCCGCCGGTGCACTTGGGCCCGGGGTTGACGCCCCAGTACCAGTCCCGGCACTTGTACTTGGGCGGCCAGATCCTGAGCGGCGACTGCTTCAGCTT
GTCGCAGCAGTCCCACGGCGGTGACGGCCATTCGTCGCCGCCGTCGGTGGGGAGGCGGATGTTGCTGTTGGGGGTGACAGCGGCGGAGGAGATGGGGATG
CCGGCGAGGAGGAGGGCTCCCAGGGTGAGCGTCAGCAGGTTGCCGCTCTTCATGGCTGATCGTTT