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Detailed information on CNT30574896


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30690726Oryza barthiiOryza sativa75.4558.4298.68378forward
CNT30552184Oryza barthiiOryza glaberrima10060.7399.8501forward

Expression of CNT30574896

Peptides detected in this lncRNA

>peptide 1 (41 aa)
LERRARREWGGDRVTTARGARRSPRPRPAVAGSQVGGSSPP*

>peptide 2 (57 aa)
GAPGSPRVGRGPGDHRARRPTLASPASGRRREPGGRLVAAVTGKAPDRRAHREWGGD*

Sequence

>CNT30574896
CTGGAGCGCCGGGCTCGCCGCGAGTGGGGAGGGGACCGGGTGACCACCGCGCGAGGCGCCCGACGCTCGCCTCGCCCGCGTCCGGCCGTCGCCGGGAGCC
AGGTGGGAGGCTCGTCGCCGCCGTGACTGGAAAGGCGCCAGACCGCCGGGCTCACCGTGAGTGGGGAGGGGACTAGGCGATCTCCGCGCTAGGCCGGGGC
CAGGCCCTGCCGTGCCGCCACGGCCGGAGGAGCGTGGAGGCGGCCCGCGGCCAGCCGCCGGTCCAGACGTCGCGCTGGTGGGCCCAGCTCGGCGCGTGGA
GGAGACGAGCCTAATGGCTTCATGAAGTACCTGAGACAAGCCCTGGTGCAGTGGTGCGCCCAGCTCGGCGCGTGAATGTGTGTTGATTGAGTTTTTTTTT
CTCCTTTTTCAAGTTACTGTGTTGTCCTGTGTGCTATCCTCTGCTCTTCTCAGTTGAGGACCTAAAAATCCTGAATAGTTCAGAGTTTCAGCATTGATCA
C