Detailed information on CNT30574862


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONOSAT000010, E-value = 2e-172

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30690631Oryza barthiiOryza sativa97.3890.4294.61557forward

Expression of CNT30574862

Peptides detected in this lncRNA

>peptide 1 (66 aa)
DDGAAVFVPDDDGATVAGCDDDGAFLLMATLLLIARLPTRHPPSLFVPKILQTRLANNDGIVAAVV*

>peptide 2 (57 aa)
RRWGGGVRARRRRGDGGRVRRRRSVPPNGDPTTYCSSPHSAPPISLCAKDPTNSPRE*

>peptide 3 (49 aa)
MESLLECFWFIYQIFSLESLVERLLEMLLLGLGLSLKTRPLYQLVKRYKP

>peptide 4 (45 aa)
MVAAAQGDERMWCGSGAGGRGEARVEESWGIASLGGWPILVSGWA*

>peptide 5 (40 aa)
MASSLPSSDPSLETAEEGEGRRRLPVDGGRGARRREDVVW*

Sequence

>CNT30574862
CGACGATGGGGCGGCGGTGTTCGTGCCCGACGACGACGGGGCGACGGTGGCCGGGTGCGACGACGACGGAGCGTTCCTCCTAATGGCGACCCTACTACTT
ATTGCTCGTCTCCCCACTCGGCACCCCCCATCTCTCTTTGTGCCAAAGATCCTACAAACTCGCCTCGCGAATAACGATGGCATCGTCGCTGCCGTCGTCT
GACCCGTCCTTGGAGACCGCGGAGGAAGGAGAGGGAAGACGTCGGCTCCCTGTGGATGGTGGCCGCGGCGCAAGGAGACGAGAGGATGTGGTGTGGTAGC
GGAGCTGGAGGGAGAGGAGAAGCTCGGGTAGAGGAGAGCTGGGGGATAGCCAGCCTAGGAGGCTGGCCAATATTAGTCAGTGGGTGGGCTTGAATGGAGA
GGTAGTTGGCTTGGAGAGGTGAATGGAGAGTTTGTTGGAGTGTTTTTGGTTCATTTATCAAATTTTTAGCTTGGAGAGCTTAGTAGAGAGGCTGTTGGAG
ATGCTCTTGCTGGGCTTGGGCTTGAGCTTGAAAACTCGGCCACTATATCAACTGGTCAAGAGATATAAGCCC