Detailed information on CNT30574851


BLAST search results

BLAST vs Swiss-Prot:
sp|P93604|LRK10_WHEAT, E-value = 1e-19

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30109862Oryza barthiiOryza longistaminata79.2383.5999.89881forward

Expression of CNT30574851

Peptides detected in this lncRNA

>peptide 1 (30 aa)
SFVTLTPRLRPWWSPSPAPAPHVHRSPRNP*

>peptide 2 (35 aa)
MHKGRAASSRETRGFLRRSQLSRLEIKLLLLLCID*

>peptide 3 (39 aa)
MHCLMIFWWHSHQILANQLEKDYHIKGLKVLRGIQSTVE*

>peptide 4 (46 aa)
PSLLLLLASVPGGRRRRRRRRTSTVPPETRKPTSWPVAGAASPSLL*

>peptide 5 (84 aa)
LRYSYSSPPSLVVAVAGAGAARPPFPPKPVSRQAGRSPEPPPPLSSDTSLSPPPQSSPISVHAIGFHHYPSLSSDLRGVRWMEA*

Sequence

>CNT30574851
TCCTTCGTTACTCTTACTCCTCGCCTCCGTCCCTGGTGGTCGCCGTCGCCGGCGCCGGCGCCGCACGTCCACCGTTCCCCCCGAAACCCGTAAGCCGACA
AGCTGGCCGGTCGCCGGAGCCGCCTCCCCCTCTCTCCTCTGACACCTCCCTCTCTCCCCCTCCTCAGTCCTCACCAATCTCGGTTCACGCCATTGGCTTC
CACCACTACCCATCTCTCTCGTCGGATCTTCGTGGGGTGAGGTGGATGGAGGCTTAGGAGTGGTGGGCATGCACAAGGGCAGGGCCGCCTCCTCACGCGA
GACAAGGGGATTCTTGCGCAGGTCGCAGCTCTCGAGACTCGAGATCAAACTCCTACTACTACTTTGCATTGACTGACGATAGAGTAATCTAGCCTATTTG
GGAACAAGCATCACAATAAATATCACTGTATATGCACTGCTTAATGATCTTCTGGTGGCATTCCCACCAAATTCTGGCAAATCAATTGGAAAAGGATTAC
CATATCAAGGGCTTAAAAGTTCTGAGGGGCATCCAGAGCACTGTGGAATAAACCATGGAGGATTGGAGGGGATAAATTACAGGAACAACAGAATGAGGCT
CCAGTACAAGAAATGCCAGCCATAATCTTGTTGTAAATTGTAATCAATGATGCGCTCCCAGAAGTGAATGCAATTCAGAGGCTTATGATAAGGTTGGTAA
AGCTTTATAGATCTACATTTTGAGCAACCACGTTTGAGATTAAGATGAAAAAATAAACGAAGACGGTGCCTGCTGTAGAGGGATTTGCCGGGTTACAAAT
AATACCTGGACGCATGCAGAATGTCTGATTCCTTCGTGAACTGAATGCGCAGCGTCGGCCTTGGAATTCACACTGCCGTGAGCAATTGAAGGCGACGGCA
TTTCCGAGGAATGTCCACGTGGTCGTCGTCTCAGAAAAACTGAGTACTCTTTCTGCACTTTCTCTGAACTTGTAGACACCACCGGATGAAAAATGTGGTA
TCGGAATGCGGCCATCTGAGACAACCTCGCAGTCCAATGGAATAAGAAATGTGGTTACATCATAAGCCACCAAATAGGAGAAGTGGCTTGTGTTGCTAAG
GCAAGAGATGGG