Detailed information on CNT30574809


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30690067Oryza barthiiOryza sativa51.4892.6499.56453forward
CNT30552115Oryza barthiiOryza glaberrima10081.56100880forward
CNT30109530Oryza barthiiOryza longistaminata93.8691.4798.31826forward

Expression of CNT30574809

Peptides detected in this lncRNA

>peptide 1 (39 aa)
MKLTQAAVLQYPILRNGTNRGTRLHRSGSSCGWQSKAIV*

>peptide 2 (33 aa)
MYTSYFNLVQLVGRFFNSANPAKMCPMHTYILY*

>peptide 3 (60 aa)
MWLAIKGHCLTADNLQMKGWPNQHDCLQYQQMHETCKCLLVECAYKNRVWRYKIRPFEDW*

>peptide 4 (48 aa)
MTVCNINRCMRPASACWSSVLTRIECGDTRSDHLRTGDCRRGRRSRSN*

>peptide 5 (32 aa)
RSPQPQPPMWRPGARHGRDELVASDLSYSNWR*

Sequence

>CNT30574809
GCGCTCCCCGCAGCCGCAGCCGCCGATGTGGCGGCCCGGCGCTCGCCATGGTCGTGATGAACTTGTCGCATCAGATCTGAGCTACTCAAATTGGAGGTGA
CGAATCATACGACTCATCTGTTCCTACAGCAAGAAATCCATTGCACGCACAGATTGAGATTTTAGCAAAGTTTTTAAGTTCAAATCTGTCCATTTAGGAG
GTGATGAAGTTAACACAAGCTGCTGTACTGCAATACCCCATATTAAGAAATGGTACAAACAGGGGAACTAGGCTCCATCGATCCGGTTCTTCATGTGGTT
GGCAATCAAAGGCCATTGTTTGACGGCAGATAACTTGCAAATGAAAGGGTGGCCAAATCAGCATGACTGTTTGCAATATCAACAGATGCATGAGACCTGC
AAGTGCTTGTTGGTCGAGTGTGCTTACAAGAATCGAGTGTGGCGATACAAGATCAGACCATTTGAGGACTGGTGACTGTCGACGAGGCCGGCGTTCGAGA
AGCAATTAAGAAAAGCTTTTGATTCGCTGTGTTTTATGTTAAGCTGTCTAGTTTGGAAGGAGAGGAGATGCTAGAATTTTCGACCAACGAATGAAATCTA
CCTTGCAGCTGCTTGGGGAAGTCAAAGAGGAGATCATGCTCTGGAGAGAAGCTGGAGTGTTCATGAATCCTTAGGAGTAGTTTGCAGCCCTAGCGACTAC
CAGCTGCTGCTGGCATGTTTCTCATCAGGTCTCGGCAGAGGCTCGTTGCTTTTCTTGTATCTAACTTTGTAACATTATGTATACATCTTATTTCAACTTA
GTACAATTGGTTGGCCGCTTTTTTAATTCGGCCAACCCAGCCAAAATGTGTCCGATGCATACATATATTCTGTATTGAGA