Detailed information on CNT30574732


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONORUT002377, E-value = 2e-58

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30696140Oryza barthiiOryza sativa73.9619.287.57338forward
CNT30117283Oryza barthiiOryza nivara86.2142.3790.86394forward

Expression of CNT30574732

Peptides detected in this lncRNA

>peptide 1 (43 aa)
DSEGIVESIEEQGQQDCDQVDGNEVEEDPYAYLQEDAEDNGAP*

>peptide 2 (45 aa)
IPRELLSRLRSRDSKTAIKWMAMKSRRIPMLIFRRMRRITALRRS*

>peptide 3 (29 aa)
MVSPLPYLFLLQHVLWTVWSYVLRLPAGL*

Sequence

>CNT30574732
GATTCCGAGGGAATTGTTGAGTCGATTGAGGAGCAGGGACAGCAAGACTGCGATCAAGTGGATGGCAATGAAGTCGAGGAGGATCCCTATGCTTATCTTC
AGGAGGATGCGGAGGATAACGGCGCTCCGTAGGTCTTAGTTACAGTCATTGCCTGTGGCAATGGTGTCGCCGCTGCCTTATCTATTTTTGTTACAGCATG
TATTGTGGACCGTTTGGTCCTATGTTCTAAGATTGCCTGCGGGCCTATGATGTAATAATTCGCGCTAGACCATCTTTGTATGCGCACTTGATATTTCGGA
AATGTAATCGTGAGTACCAGACTACTTGATCCAGGGAAATGGTACTATTAACACGAGTGATTCCTGTTATAAAAACGGGGTCTACATCAGACCTCACGTC
CTGAGTAGAATGGTTAGTGCTAAGTAGTAATGGGATCGTGCTTCGTGCTTCTTCTAG