Detailed information on CNT30574718


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONORUT000140, E-value = 1e-117

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30690531Oryza barthiiOryza sativa51.953.2893.15219forward
CNT30595547Oryza barthiiOryza meridionalis38.6346.9795.71163forward
CNT30369366Oryza barthiiOryza glumipatula24.6420.4798.08104forward

Expression of CNT30574718

Peptides detected in this lncRNA

>peptide 1 (67 aa)
MPPPPPPPPISRTAMMRRRRRSGARGGRRRRRRRRSWRAGSGPSRGRAPTTPPSPPPTTTRPSPASSP

>peptide 2 (63 aa)
MRGARRTSTRAEHPAHTQQGNGRDAAAAAAAADQPHGDDASSSSFRCTRRSAASAPPAKLEGR*

Sequence

>CNT30574718
CAAATTTGACGTGAAGCACATGAAATTGAAAGGAAACTAAAACTGATTTATTACTTGTTCCATTAAAACCATCACACTAGGGTACGTGGTGAAACCGTGA
AAGTAAAAAAAAAACAGTAGTAAAGTGAGGCCCTGCTCGCTGTTACATGAGAGGTGCACGAAGAACAAGCACACGAGCAGAGCATCCAGCCCACACGCAG
CAAGGAAACGGTAGGGATGCCGCCGCCGCCGCCGCCGCCGCCGATCAGCCGCACGGCGATGATGCGTCGTCGTCGTCGTTCAGGTGCACGCGGAGGTCGG
CGGCGTCGGCGCCGCCGGCGAAGTTGGAGGGCCGGTAGTGGCCCGTCACGGGGTCGGGCACCCACGACACCTCCCTCGCCGCCGCCGACAACGACCCGTC
CTTCGCCTGCGTCATCCCCGCC