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Detailed information on CNT30574687


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30689984Oryza barthiiOryza sativa58.3146.9595.6477forward
CNT30106308Oryza barthiiOryza longistaminata90.2297.7594.44738forward

Expression of CNT30574687

Peptides detected in this lncRNA

>peptide 1 (63 aa)
METFGWAGGGQLMHHDDIYLPRSVGCGRPFELDDAFLGACFGAQLQCDGGVGGGDGGGCLQGTS

>peptide 2 (40 aa)
ERQLLALYILTQLTGVGEAMNMRTIISLIPDTSSVLSPPL*

>peptide 3 (57 aa)
RETVTSSIYSHTAHRCRRSHEHEDHHIPHPRYIICTVSSSLASLLSLLCPLLCCLVN*

Sequence

>CNT30574687
GAGAGAGACAGTTACTAGCTCTATATATTCTCACACAGCTCACAGGTGTAGGAGAAGCCATGAACATGAGGACCATCATATCCCTCATCCCAGATACATC
ATCTGTACTGTCTCCTCCTCTCTAGCTTCTCTCCTCTCCCTGCTGTGCCCCTTGCTTTGTTGCTTGGTCAATTAGAGCTAAGCAGCAAGCTAGCTTCCTG
GAAGCAAGGCCGGCGCCTGGCTGGGACAAGAACCACAGGAACCACAGCTGACTGATTGATCAATCAATCAATCTTCTGCTAATCAATCAATCTTCTGCTG
CCCTGCTGCCTCACAGCCTCAGCAAGACAGTACGTACAGATCAATTTTGGCCCTCTTGAGGCTCCGGCCGGTCGCCGACTCGCCGTCGTCGAAGGTGCTC
TCCGGCCGGCGGAGTTAACATTGAGCTTGATTTCAAGCCGCGCTCCGATCCGACCGGCAAAGCGCCGAAGCTGCCTTCCGTTGTTTCACTCTGGTCTCTG
GGGGCTCGCCATCAGCCATCCGTACCGAGCTGTAGTGTGCGCGGTTTTGTCGCGTCGTCGTACGCCGAGAATCCGTGAGCCAGACAGACAAGCCAGTGGT
TTGGTGATTCTTGCGGCGGCGCGGCGATGGAGACCTTCGGCTGGGCCGGCGGCGGGCAGCTGATGCACCACGACGACATCTACTTGCCGCGCTCGGTGGG
GTGCGGGCGGCCGTTCGAGCTGGACGACGCGTTCCTGGGCGCGTGCTTCGGCGCCCAGCTCCAGTGCGACGGTGGCGTCGGCGGCGGCGACGGCGGCGGG
TGTCTGCAGGGTACCTCG