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Detailed information on CNT30573625


BLAST search results

BLAST vs Swiss-Prot:
sp|K4D422|U73C4_SOLLC, E-value = 3e-28

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30645900Vitis viniferaCannabis sativa24.6514.5485.25122forward

Expression of CNT30573625

Peptides detected in this lncRNA

>peptide 1 (94 aa)
RDDPPSLIAVSAAFFMAMIRRRRVVFPSSDSINSLTRFSTSVAVTNPSSDSSIGKASFISSTSTTLLNLCSAYSGHATIGTPAHTASSTEFHPQ*

>peptide 2 (88 aa)
MPPLARLHTLLQALSSTHSESQTLQQRRDSRRPPEEPTTSPLGPSPWFDPKTHLGEGNSNPVPVVLKNACSGPWRVGSALPTRTSAHSS

Sequence

>CNT30573625
TGCGGGATGATCCACCGTCGCTCATTGCAGTCTCAGCAGCTTTTTTCATGGCCATGATCCGGAGACGAAGGGTGGTGTTTCCTTCCTCCGACTCCATCAA
CTCTCTAACTCGCTTCTCAACCTCAGTTGCAGTAACAAACCCTTCTTCCGACTCTTCCATTGGAAAGGCTAGCTTCATTTCCTCCACCAGCACCACCCTG
TTAAACCTTTGCTCGGCATATAGTGGCCATGCCACCATTGGCACGCCTGCACACACTGCTTCAAGCACTGAGTTCCACCCACAGTGAGTCACAAACCCTC
CAACAGAGGCGTGATTCAAGACGGCCACCTGAGGAGCCCACGACTTCACCATTAGGCCCCTCTCCTTGGTTCGATCCAAAAACCCATCTGGGAGAAGGGA
ATTCAAATCCGGTTCCGGTGGTGCTAAAAAACGCCTGCTCGGGTCCTTGGAGGGTGGGCTCCGCACTACCCACAAGAACCTCTGCCCACTCCTCT