Detailed information on CNT30573105


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9FID0|GL114_ARATH, E-value = 4e-73

BLAST vs NONCODE:
NONTPRT002878, E-value = 7e-09

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30515314Vitis viniferaJuglans regia39.1735.9683.54237forward
CNT3071407Vitis viniferaQuercus suber29.7576.682.22180forward
CNT30382100Vitis viniferaManihot esculenta46.7855.9379.51283forward
CNT3045720Vitis viniferaPrunus dulcis58.8459.3380.06356forward
CNT3090146Vitis viniferaSolanum tuberosum22.6417.8683.21137forward
CNT30567662Vitis viniferaActinidia chinensis22.1544.3785.07134forward
CNT30240637Vitis viniferaAvena sativa23.1435.9981.43140forward
CNT3061946Vitis viniferaArabidopsis lyrata12.7321.9485.7177forward
CNT30706383Vitis viniferaPrunus avium58.8456.6980.06356forward
CNT3031606Vitis viniferaTheobroma cacao34.0545.2783.5206forward
CNT3027612Vitis viniferaPopulus trichocarpa30.5810.980185forward
CNT30102982Vitis viniferaOryza rufipogon11.92486.1172forward

Expression of CNT30573105

Peptides detected in this lncRNA

>peptide 1 (30 aa)
MRPIGNTKTSPLLRTLLMRRFSVLDVTKPT*

>peptide 2 (37 aa)
MGGSDPNTALAMVITPGFWLLRAAMATALVFPTLNWK*

>peptide 3 (38 aa)
MDMPRVLSPFICSTFTVVTFEATAFDVFPGLSRPEKKKS

Sequence

>CNT30573105
TCTTACTATGTTATGGTTATGATGAGGGAACATAACAAATGCTTACTTAAAAAACAACTAAGAAAACCAATGGTTCATAGCTTCTAGAGCTATATATTTT
GCTAGTGGTTGTCCCACTAGAACCTTGACTGAAGGTAGCTAACCACTTTCTTGTCCAACTGGAAGGCCCTTGTGAGAACATCAGGATTGATGGGTGGATC
TGATCCAAATACTGCATTGGCTATGGTGATAACACCTGGATTTTGGCTGCTCAGAGCAGCAATGGCTACTGCCTTAGTCTTCCCAACATTGAATTGGAAG
TGAATGAGACCAATAGGAAACACAAAAACATCCCCCTTGTTGAGGACTTTGCTAATGAGGCGGTTTTCGGTGTTGGATGTGACAAAGCCAACGTAGAGGG
TTCCCTCCAAGACAGTTAGGATCTCGGTGGCACGAGGGTGAGTGTGAGGAGGGTTTTGGCCATATGGTTCATAGTCAATACGAACCATGGATATGCCAAG
AGTGTTGAGTCCCTTTATTTGTTCAACATTTACGGTAGTGACATTTGAGGCTACTGCATTTGATGTGTTCCCTGGCTTATCCAGGCCTGAAAAGAAGAAA
TCCTC