Detailed information on CNT30573048


BLAST search results

BLAST vs Swiss-Prot:
sp|Q6K5Q0|GL21_ORYSJ, E-value = 1e-81

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30240671Vitis viniferaAvena sativa25.8216.1381.75126forward
CNT30467578Vitis viniferaSaccharum spontaneum2518.7781.97122forward
CNT30717911Vitis viniferaMalus domestica golden26.2315.7282.03128forward

Expression of CNT30573048

Peptides detected in this lncRNA

>peptide 1 (29 aa)
VSHSSRCGCQSRTEIEDSQPPSCPLGRPL*

Sequence

>CNT30573048
GGGTGAGTCATTCTAGTAGGTGTGGTTGTCAGTCTAGAACTGAGATTGAAGATAGTCAACCACCTTCTTGTCCACTTGGAAGGCCTTTGTAAGAACATCA
GCTGAAATTGCTGGCTTTGAGCCAAATACCGCATTGGCAATGGTGATCACGCCAGGGTTCTGGCTACTCAATGCAGCAATGGCTACTGCTTTTGTTTTTC
CCACATTGAGCTGGAAGTGAATGAGACCCTCTGGGAAGACGAAAACATCTCCTTTGTAAAGGACCTTGCAGATGAGGCGGTTGTCGGGATTAGAGGTCAC
GAAGCCTACATAAAGTGTTCCCTCCAGGACGGTCAGTATCTCTGTGGCACGGGGGTGGGTGTGGGGAGGATTGAGACCATATGGGGCATAATCAACGCGA
GCTAGTGAAATGCCAAGGGTGTTGAGTCCGGGTATCTGAGCCACATTTGCGGGTGTGACCATTGACCCAACTTTGTTTGAGGTATTTC