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Detailed information on CNT30570929


BLAST search results

BLAST vs Swiss-Prot:
sp|Q1S9I9|H2B1_MEDTR, E-value = 1e-52

BLAST vs NONCODE:
NONMEST003205, E-value = 4e-54

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30693619Vitis viniferaOryza sativa29.3631.1281.73197forward
CNT30675823Vitis viniferaSetaria viridis19.0829.4985.16128forward
CNT30522940Vitis viniferaSetaria italica27.5726.2882.16185forward
CNT30315505Vitis viniferaCorylus avellana28.0241.1485.11188forward
CNT30518188Vitis viniferaJuglans regia41.4331.5685.61278forward
CNT30702570Vitis viniferaQuercus lobata42.7757.486.06287forward
CNT30618876Vitis viniferaSesamum indicum66.1727.3181.76444forward
CNT3072234Vitis viniferaQuercus suber28.4630.3285.86191forward
CNT30379403Vitis viniferaManihot esculenta40.8348.7583.21274forward
CNT30526608Vitis viniferaPhaseolus vulgaris66.4755.1381.17446forward
CNT30632073Vitis viniferaVigna unguiculata53.547.7483.01359forward
CNT30194796Vitis viniferaPisum sativum41.8838.5583.63281forward
CNT30163367Vitis viniferaPistacia vera60.6648.8680.84407forward
CNT3094085Vitis viniferaSolanum tuberosum31.7442.1883.1213forward
CNT30181099Vitis viniferaSecale cereale39.0532.4380.92262forward
CNT30307570Vitis viniferaTriticum aestivum39.234.4781.37263forward
CNT30220727Vitis viniferaHordeum vulgare39.0533.5980.92262forward
CNT30396055Vitis viniferaTriticum turgidum39.0532.0781.3262forward
CNT30565715Vitis viniferaActinidia chinensis42.3236.1884.15284forward
CNT30586986Vitis viniferaMusa acuminata36.8169.7783247forward
CNT3086649Vitis viniferaVigna radiata41.7337.5384.29280forward
CNT30510004Vitis viniferaSolanum lycopersicum14.932.7988100forward
CNT30552027Vitis viniferaOryza glaberrima39.6449.3582.33266forward
CNT30171046Vitis viniferaTrifolium pratense46.587.8985.26312forward
CNT30443203Vitis viniferaAegilops tauschii41.4342.3880.22278forward
CNT30243491Vitis viniferaAvena sativa29.3622.2383.76197forward
CNT30660053Vitis viniferaTriticum dicoccoides41.4341.9380.94278forward
CNT30597299Vitis viniferaFraxinus excelsior59.1772.3181.36397forward
CNT30447591Vitis viniferaSaccharum spontaneum39.0548.0781.68262forward
CNT30130711Vitis viniferaLolium perenne38.938.3880.46261forward
CNT303693Vitis viniferaZea mays19.3737.6884.62130forward
CNT30606042Vitis viniferaGossypium raimondii30.466.8987.25204forward
CNT30205622Vitis viniferaHelianthus annuus38.395.1984.05257forward
CNT30129800Vitis viniferaCorymbia citriodora55.2946.0984.1371forward
CNT30684130Vitis viniferaTriticum urartu38.93681.61261forward
CNT30722585Vitis viniferaTriticum spelta39.0535.7480.92262forward
CNT30346527Vitis viniferaEragrostis tef26.2383.4180.68176forward
CNT30363575Vitis viniferaSorghum bicolor36.9626.980.24248forward
CNT30360275Vitis viniferaLactuca sativa42.7764.2184.67287forward
CNT30369169Vitis viniferaOryza glumipatula38.7545.3882.69260forward
CNT30154529Vitis viniferaPrunus persica29.0682.6382.05195forward
CNT30429187Vitis viniferaPapaver somniferum40.6926.282.42273forward
CNT3052765Vitis viniferaAmborella trichopoda23.8531.588.75160forward
CNT3024557Vitis viniferaPopulus trichocarpa45.3158.6981.91304forward
CNT30327286Vitis viniferaAsparagus officinalis38.4528.5484.5258forward
CNT30101075Vitis viniferaOryza rufipogon20.4219.5485.4137forward
CNT30574682Vitis viniferaOryza barthii25.7825.2982.66173forward
CNT30496069Vitis viniferaDigitaria exilis39.0532.8380.53262forward
CNT30174435Vitis viniferaVigna angularis42.0342.0984.04282forward
CNT30557628Vitis viniferaPanicum hallii17.2920.8384.48116forward
CNT3065708Vitis viniferaSelaginella moellendorffii19.0836.8984.38128forward
CNT30114697Vitis viniferaEutrema salsugineum66.3272.5981.8445forward

Expression of CNT30570929

Peptides detected in this lncRNA

>peptide 1 (76 aa)
MNLLQDLEDVDLVGLNALLGALLLLISGCAGLFGELLTGFGLLLRRGLLGHGFLLLRWLLLGGLLLSLWRHRRFLG*

Sequence

>CNT30570929
AGACATTCGGATCAAGCCGATCCAAATTCACATCCAACAAACATTAGAAAAAGCCCTAATCCTAGGCATCGAATGTAAACCCTAAACCTAGACAGTCAAA
GTTCCGATTTCATCTCTAAACACGAATCCAACCATCAATCGCGTTCAAGAACTTGTAAATTTCGTCACAGCCTTGGTTCCCTCGGAGACCGCGTGCTTGG
CCAACTCTCCAGGAAGCACCAATCGCACGGCAGTCTGGATCTCCCGCGAAGTAATCGTGGGCTTCTTGTTGTAGCGAGCGAGCCGCGAGGATTCCTGAGC
AAGCTTCTCAAAGATATCGTTGATGAAGCTGTTCATAATACCCATGGCCTTGCTAGAGATCCCGATATCGGGATGAACCTGCTTCAAGACCTTGAAGATG
TAGATCTTGTAGGTCTCAACGCTCTTCTTGGTGCGCTTCTTCTTCTTATCAGTGGCTGCGCCGGCCTCTTTGGGGAGCTTCTTACCGGCTTTGGGCTTCT
TCTCCGCCGGGGACTTCTCGGCCACGGTTTTCTTCTCCTCCGCTGGCTTCTTCTCGGCGGGCTTCTTCTCAGCCTTTGGCGCCATCGCAGATTCCTAGGA
TGAAAAGATGAGGTTTGGTAACGGTTGGGGAAAACTGAAGCGAAAAAATCTCGAAGTCTTCAGTGATGGGG