Detailed information on CNT30570768


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30692619Vitis viniferaOryza sativa39.2482.6382.56195forward
CNT30530112Vitis viniferaEucalyptus grandis40.6466.8983.66202forward
CNT30316727Vitis viniferaCorylus avellana41.0516.4689.22204forward
CNT30517065Vitis viniferaJuglans regia41.2570.6984.88205forward
CNT30618048Vitis viniferaSesamum indicum31.1943.1880.65155forward
CNT3070514Vitis viniferaQuercus suber36.6274.5982.42182forward
CNT30221766Vitis viniferaHordeum vulgare17.713285.2388forward
CNT30566887Vitis viniferaActinidia chinensis40.4465.2683.08201forward
CNT30586912Vitis viniferaMusa acuminata38.8357.181.87193forward
CNT30127153Vitis viniferaCorymbia citriodora33.461.0385.54166forward
CNT30351041Vitis viniferaEragrostis tef39.4442.8982.14196forward
CNT30479822Vitis viniferaArabidopsis halleri24.5529.5481.15122forward
CNT30704146Vitis viniferaPrunus avium40.8528.5984.24203forward
CNT3022423Vitis viniferaPopulus trichocarpa40.0419.3683.42199forward
CNT30329110Vitis viniferaAsparagus officinalis36.2235.3680.56180forward
CNT30120938Vitis viniferaCitrus clementina36.6285.4581.32182forward
CNT30331317Vitis viniferaDioscorea rotundata27.5742.1586.86137forward
CNT30558432Vitis viniferaPanicum hallii23.5440.2184.62117forward

Expression of CNT30570768

Peptides detected in this lncRNA

>peptide 1 (59 aa)
RELKDLAEKDFIGEGPVDVGGVEQGDAAVDGVVNESDHVFFRLGRAIEGGHAHAPKSLS*

>peptide 2 (29 aa)
MTQRLALNAAISNNLEILDYGASQAGRSDS

Sequence

>CNT30570768
GGAGAGAATTGAAGGACCTTGCCGAGAAGGATTTCATTGGTGAAGGGCCCGTAGATGTCGGAGGTGTCGAGCAAGGTGATGCCGCTGTTGACGGCGTGGT
GAATGAGAGCGATCATGTCTTCTTCCGGCTTGGGAGGGCCATAGAAGGCGGACATGCCCATGCACCCAAGTCCCTGAGCTGAAACCTCTAGGCCCTGTGA
GCCCAGCTTCATCCTCCTTACACTACCCATCTTCCCTTAACACTCTCCTACTCTCTGCCAAAAGCGGTTGCTACTTCCTAGTATTTATAAGCAGGGAGGG
AAATTCTGTCCCAACAAGATGTTGGGTTATCATTATCATTTCGGATAATTTGACCGACAGGTGACAGTCAGTGGTGGTAGGTGAGATGATGTGAGTATCC
TAACACATGACGCAAAGGCTTGCGCTAAATGCCGCAATTTCAAACAATCTAGAGATTCTAGACTATGGTGCTAGCCAGGCCGGCCGATCCGACTCTG