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Detailed information on CNT30566887


BLAST search results

BLAST vs Swiss-Prot:
sp|P49249|IN22_MAIZE, E-value = 7e-35

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30692619Actinidia chinensisOryza sativa47.7362.2985.03147forward
CNT30530112Actinidia chinensisEucalyptus grandis49.035088.74151forward
CNT30316727Actinidia chinensisCorylus avellana53.5713.3288.48165forward
CNT30517065Actinidia chinensisJuglans regia50.3253.4584.52155forward
CNT30699837Actinidia chinensisQuercus lobata19.1625.1188.1459forward
CNT30618048Actinidia chinensisSesamum indicum43.8337.686.67135forward
CNT3070514Actinidia chinensisQuercus suber45.4557.3880.71140forward
CNT30221766Actinidia chinensisHordeum vulgare27.630.9185.8885forward
CNT30586912Actinidia chinensisMusa acuminata49.6845.2783.66153forward
CNT30131974Actinidia chinensisLolium perenne23.0523.2888.7371forward
CNT30127153Actinidia chinensisCorymbia citriodora43.5149.2688.81134forward
CNT30343741Actinidia chinensisEragrostis tef63.6480.3385.71196forward
CNT30479822Actinidia chinensisArabidopsis halleri29.8722.2882.6192forward
CNT30570768Actinidia chinensisVitis vinifera65.2640.4483.08201forward
CNT30704146Actinidia chinensisPrunus avium51.322.2584.81158forward
CNT3022423Actinidia chinensisPopulus trichocarpa5014.9881.17154forward
CNT30329110Actinidia chinensisAsparagus officinalis51.331.0482.28158forward
CNT30331317Actinidia chinensisDioscorea rotundata41.5639.3884.38128forward
CNT30558432Actinidia chinensisPanicum hallii49.3552.2386.18152forward

Expression of CNT30566887

Peptides detected in this lncRNA

>peptide 1 (29 aa)
MSEVSRKVTPEWTAWWMSLIMSSSGLSGP*

Sequence

>CNT30566887
GTAAATAGAGCAAGTAAAGAAATCAGAGGATGGAAGTGAGTGCGCGACCTTGCCGAGGAGGACTTCGTTGGTGTGTGGGCCGTAGATGTCGGAAGTGTCG
AGAAAGGTGACGCCGGAGTGGACGGCGTGGTGGATGAGTTTGATCATGTCTTCTTCGGGCTTGAGCGGGCCGTAGAAGGCCGACATGCCCATGCAGCCAA
GGCCCAGTACAGAAACCTGCATCCCCTGCGACCCCAGCTTCATCCTTCCCACTTTCGCCATCTTTCTCTAGATGTGTTGTGAGCGAAGTCTAGTGTGGAG
AGTGAATT