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Detailed information on CNT30561656


BLAST search results

BLAST vs Swiss-Prot:
sp|O23755|EF2_BETVU, E-value = 0.0

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30640184Actinidia chinensisNymphaea colorata23.9344.2582.69335forward
CNT30532226Actinidia chinensisEucalyptus grandis24.3647.1682.99341forward
CNT30316236Actinidia chinensisCorylus avellana16.6450.7688.41233forward
CNT30547527Actinidia chinensisIpomoea triloba21.1468.3685.47296forward
CNT30512729Actinidia chinensisJuglans regia57.3678.0484.18803forward
CNT30371838Actinidia chinensisArabidopsis thaliana35.7937.9882.44501forward
CNT30276060Actinidia chinensisChenopodium quinoa24.6454.4283.19345forward
CNT30379936Actinidia chinensisManihot esculenta1771.2686.55238forward
CNT30711584Actinidia chinensisGlycine max18.3636.5185.6257forward
CNT3045373Actinidia chinensisPrunus dulcis40.5772.4582.39568forward
CNT30191206Actinidia chinensisSecale cereale61.570.3483.39861forward
CNT30300473Actinidia chinensisTriticum aestivum41.2959.7183.22578forward
CNT30224354Actinidia chinensisHordeum vulgare36.9399.6184.14517forward
CNT30395070Actinidia chinensisTriticum turgidum54.3699.4883.31761forward
CNT30510505Actinidia chinensisSolanum lycopersicum40.0751.6684.14561forward
CNT30552635Actinidia chinensisOryza glaberrima34.8647.0184.63488forward
CNT30143750Actinidia chinensisMedicago truncatula13.3624.4186.63187forward
CNT30441158Actinidia chinensisAegilops tauschii53.4398.5581.55748forward
CNT30313757Actinidia chinensisCamelina sativa36.2957.9283.07508forward
CNT30612508Actinidia chinensisArabis alpina35.6419.6681.16499forward
CNT30135610Actinidia chinensisLolium perenne28.6447.481.3401forward
CNT3014085Actinidia chinensisZea mays20.5747.2183.33288forward
CNT30683923Actinidia chinensisTriticum urartu56.9387.182.94797forward
CNT30345702Actinidia chinensisEragrostis tef38.7967.280.48543forward
CNT30596122Actinidia chinensisOryza meridionalis23.2947.1183.74326forward
CNT30359537Actinidia chinensisLactuca sativa22.1447.0480.65310forward
CNT30369654Actinidia chinensisOryza glumipatula32.551.784.4455forward
CNT30705326Actinidia chinensisPrunus avium19.521.2586.45273forward
CNT30107537Actinidia chinensisOryza longistaminata24.0736.6785.46337forward
CNT3024028Actinidia chinensisPopulus trichocarpa13.6425.8587.43191forward
CNT30332479Actinidia chinensisDioscorea rotundata8.0739.9384.96113forward
CNT30149525Actinidia chinensisBrachypodium distachyon7.2133.4484.16101forward
CNT30100253Actinidia chinensisOryza rufipogon42.6454.1783.75597forward
CNT30575986Actinidia chinensisOryza barthii31.0736.8383.22435forward
CNT30497701Actinidia chinensisDigitaria exilis22.8698.4684.69320forward
CNT30116094Actinidia chinensisOryza nivara34.8655.4584.63488forward
CNT30604019Actinidia chinensisOryza punctata20.0783.1484.7281forward

Expression of CNT30561656

Peptides detected in this lncRNA

>peptide 1 (62 aa)
MSTTILGPVVSGPKHQIFFARSLSQPNSSDKILERTLGSSLGPTRPSSMASASPSSMGLASM*

>peptide 2 (36 aa)
MNIMTNLQLVLELRQWCHLLLQTLSLPNLGHKGCCL*

>peptide 3 (62 aa)
MKSSCKSFKQISRCSSPAPAMMCSPDSSMEQTTIGSDFARRFRPSTSLGRSEATLHSLQHQQ*

Sequence

>CNT30561656
GCTGATTATCATGAACCACAACCACATCAAAAAGTATAACCAGCACCAGAAAACAGAACCGATATAAATTGTCCTTCGAACAAACACAACACAGTGACAG
TAGTAACTAAGAAAATAAAACTCGTCCAAAAAGCAAGCATAACATAAGACCCCGGAGGGATTAACTCGACAACGAAACGTGACTCCACAGTCGCATATCA
GAAAAATGAGAAACAAAAGCAAAAAATTATGCCCAGCAATCAGCATGTGTATGTCTTTATCATCTCTCTCAAGAGGCTGAACTCTAGTCACTTGGAATGA
ATATTATGACAAACTTACAGCTTGTCCTCGAACTCAGACAGTGGTGTCATTTGCTCCTTCAAACCCTTTCTCTTCCGAATCTCGGTCACAAGGGTTGCTG
CCTGTGATCCGGATTCCAACGGATCCGACGACATCATTTCCCAATGATCAAAAACACACTGCGGAAAGGCCTGCCCTGAAGTTGCTGCCCTCAAAGTGCT
CGAGAATCCAAACGACTCAATAACGGGAAGGTACGCCTTGATGTTGTAGAGAGGAGTACCTGGCCTCTGCATTTCCTCAAACACGTGACCACGTTTTTGA
TTCAGAACACTGTAGATTCCACCGAGGGCATTCTCTGGGGCTTGGATCTCCACCAAGTATACGGGCTCCAAAAGACGGGGCTTGGCGGTTAGCTGGGAAG
CGTAAATAACCCTCCTAGCCGTTGGAATGACCTGGCCACCACCTCTGTGAATAGCATCAGCGTGAAGAACAACATCACAAACTTCAAAGCAAATACCCCG
CATGTTTTCTTCCGCAAGCGCCCCTTCCTTTGATGCCCATTGAAACCCAGCAACAACCGAGTCCTTGATTTCATTGAGGTATTGAACTCCCTTACACATG
TCAACCACCATATTAGGGCCAGTGGTTTCCGGGCCAAAACACCAGATTTTCTTTGCGAGATCCTTGTCCCAACCGAACTCTTCAGACAAGATTTTAGAAC
GAACCTTGGGGTCATCTCTTGGACCAACACGTCCATCATCAATGGCCTCAGCAAGCCCCTCCTCCATGGGTCTAGCTTCCATGTAAAGACGGTTATGCTT
GTTTGGCGACTTGCTCATCACAGTTCGGCTCGACTTCTCTAGAACGGTTTCGCGGAACGACACAACAGGATCTGACTTTATAATTTCAGCACCACCCATG
AAATCGTCCTGCAAATCCTTCAAACAAATCTCGAGGTGCAGCTCTCCAGCACCAGCAATGATGTGCTCCCCAGACTCCTCAATGGAACAGACAACCATAG
GATCAGATTTCGCCAGACGTTTCAGACCTTCAACAAGCTTGGGAAGATCAGAGGCAACCTTACACTCTCTCCAGCACCAGCAATGATGTGCTCCCCAGAC