Detailed information on CNT30558858


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9FRG8|GRF9_ORYSJ, E-value = 6e-101

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30448603Panicum halliiSaccharum spontaneum10.5825.6290.36166forward
CNT30340693Panicum halliiEragrostis tef25.695.1284.12403forward
CNT30147738Panicum halliiBrachypodium distachyon5.4820.4390.786forward
CNT30579587Panicum halliiEchinochloa crusgalli25.9454.1293.86407forward
CNT30593969Panicum halliiEragrostis curvula19.4435.7187.54305forward

Expression of CNT30558858

Peptides detected in this lncRNA

>peptide 1 (53 aa)
MLHLCSPFDFCFSFEHCQGGGEGENGNTEHCIMICREHIHPRTCSLTSLFYAA*

>peptide 2 (54 aa)
MVSGQDLITNHMNLTHTFCLSRHCSWSLLRSRPEVHLEASPKNLRCNQPALVSC*

>peptide 3 (29 aa)
MKCYRQPWPGRRRGPVSGVVLCKSLWPLG*

>peptide 4 (71 aa)
MLKRAATLSSETCMAKGAPRQKRKGEKADEMLQAALAGEEEGPSERCSAVQIPMAARLGPSTAFIRAHQVP*

>peptide 5 (36 aa)
MRAWCSSSIHCEGVKGLLVLDSRKSCSFGLPRSKPR*

Sequence

>CNT30558858
CATGCATGGGACAAACATCCAGATCATCTCAACCTTCGCTTCTGAGCCTTTCTTCACTTTCATGGTGAGATATCTATGTTAAGCTCTTCATAGATTGAGG
AATCATGGTGAGTGGTCAAGATTTAATTACCAACCATATGAACTTGACTCACACTTTTTGTTTGAGTCGTCACTGTTCTTGGAGTTTGTTAAGATCTCGC
CCAGAGGTCCACCTTGAGGCATCTCCCAAGAACTTGAGATGCAATCAGCCTGCACTTGTGTCATGTTAGATGTAAGGCAGGTTGTCCGTGGACCTTGTGC
CAAGTGGTAGAAAGTTGATGAAACTAGCATGGAATCAGAATATTTGTTTTTCTCAGAATCCGTGTTCTCATTCTTTGCCAGGCTGAAGTTTTGAAGAACT
GACTGGAGGGATTCAGCACCATGCAGCTGTGTGGAGGAAATGCTCTTGTGGCTCTGCTGGTTTCTGCTTTCCCAGGCTTTCAATATTGTGTCTGAGGAGA
TTGACTGACTATCCACTGCAGGGCTGTACTTTTCTGGTTTATTATGCTGCTTCAGTTGAGAGAGCAGGGACAAGCTGACTGTGCCTGGCTTCGAGTCGTT
AACTTTTGCCTTCTTCAAGCTACCCTGTGACACAGCACATGGCAACGAGCCAGCAGCAGCAGTACTTGTGATCAGCCATTGCCTCCTTGGAGCATCGCCA
TTTCTTTCCATCTGTTCGACGGCATCTTCCAGGTTCTGGATCAGAGTCGGCATTGGTGTACCCTTGATAAAGAGGTCTCCAGCTCACTGCATTAGAGAAG
CTGGATGGTATTGGGGCCTTTGCATGAAGATACTTGTATATGAGAGCCTGGTGCTCCAGCTCCATCCACTGCGAGGGAGTAAAGGGCCTCTTGGTCCTGG
ATAGCAGGAAATCCTGCTCATTTGGCCTTCCAAGATCCAAGCCTAGATGACGATGAAACAAGGAGAATATTTAGTCTGACGAAACCTGAAATGCTGAAGC
GAGCAGCAACCTTATCTTCAGAGACGTGCATGGCGAAGGGAGCGCCAAGACAAAAGCGTAAAGGCGAAAAAGCAGATGAAATGTTACAGGCAGCCTTGGC
CGGGGAGGAGGAGGGGCCCAGTGAGCGGTGTAGTGCTGTGCAAATCCCTATGGCCGCTAGGCTAGGCCCCTCCACAGCATTCATCAGAGCTCATCAAGTT
CCATGAATGCTGCACCTCTGTTCTCCTTTTGACTTTTGCTTTTCTTTTGAACATTGCCAGGGGGGGGGGGAGGGCGAAAATGGCAATACTGAACATTGCA
TCATGATTTGCAGAGAACATATCCATCCAAGAACATGCAGCCTAACATCTTTGTTCTACGCAGCTTAACATGAAACTGAGGAGGAATGAACAAGAGGGAA
GGCTCTTGGTTGCTGAAGAGGCGTACACACCTGAGGGCAATGCCTGAGCAGCCTTGGAGAACCTGAGCATCTTCTGCTCGTCAAGGAAGGGGGAGGGGTG
GAAAGCCGCTGCGGCTGCTGCCTCGCCTCCTCGCTTGAGGAGACCCAGGTCGCCCTCCCCGGGCGACGG