Detailed information on CNT30558020


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30523459Panicum halliiSetaria italica53.5611.3389.91218forward
CNT30188908Panicum halliiSecale cereale26.0420.3887.74106forward
CNT30338536Panicum halliiEragrostis tef21.874.7592.1389forward

Expression of CNT30558020

Peptides detected in this lncRNA

>peptide 1 (47 aa)
MYCRFILRDQRENNARRLCTIYQFVRQTTSFLAVHVLLRCCSPLLKT*

>peptide 2 (38 aa)
MVVPMILPQVMQLLPQAFCLPLPNQQGSDEVHSYRDLP*

>peptide 3 (32 aa)
TSTAVFLFPLLLGLEKMRVQAVVCRSELSAMA*

Sequence

>CNT30558020
GCACCAGCACTGCTGTGTTCCTGTTTCCCCTTCTTCTAGGGTTAGAAAAGATGAGGGTTCAAGCTGTGGTGTGCAGAAGTGAGCTCAGTGCTATGGCATG
AAATTCAAGATCTGATCTATACAGCCAGGTTGGACCATGGTCGTGCCGATGATTTTACCGCAAGTTATGCAGTTGCTGCCTCAAGCTTTCTGCCTCCCTT
TGCCAAACCAGCAGGGATCAGATGAAGTTCATTCATATAGAGACCTTCCATAGCCATGTATTGTAGGTTTATCCTGAGAGATCAAAGAGAAAATAATGCC
AGAAGGCTTTGTACGATCTATCAGTTTGTTAGGCAAACTACTAGCTTTCTAGCTGTTCATGTATTGTTACGCTGTTGTTCCCCATTGCTGAAAACCTAAT
GAAATAC