Detailed information on CNT30557998


BLAST search results

BLAST vs Swiss-Prot:
sp|B9FJG3|RSLE1_ORYSJ, E-value = 0.0

BLAST vs NONCODE:
NONORUT003941, E-value = 0.0

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30249176Panicum halliiAvena sativa16.0162.6688.38396forward
CNT30452219Panicum halliiSaccharum spontaneum54.0440.9989.751337forward
CNT30229173Panicum halliiAnanas comosus28.8624.678.43714forward
CNT30346251Panicum halliiEragrostis tef19.6480.290.12486forward
CNT30362965Panicum halliiSorghum bicolor48.7542.2990.381206forward
CNT30596245Panicum halliiOryza meridionalis26.3969.6287.44653forward
CNT30107897Panicum halliiOryza longistaminata42.2844.9387.571046forward
CNT30100657Panicum halliiOryza rufipogon43.0139.5786.941064forward
CNT30576541Panicum halliiOryza barthii42.2833.2987.381046forward
CNT30580242Panicum halliiEchinochloa crusgalli54.2451.8992.41342forward
CNT30497727Panicum halliiDigitaria exilis7.9247.1294.9196forward

Expression of CNT30557998

Peptides detected in this lncRNA

>peptide 1 (49 aa)
MEPESVHLTYDPSALTSAELGASLAAGEYWSQSFAQTSASTISGRRELL*

>peptide 2 (46 aa)
MLNDHLRQVGATAVLIKSSICITSISVSSLGSPLHSSLTIIVSTSC*

>peptide 3 (36 aa)
MSCEEHSLSNVMVNSLSFIFQSERVMLIASLSAFSE*

>peptide 4 (48 aa)
MIQQKLLHDNSELNRVRHNKLRLYKTNIRITISSQSQPTIRLQLLHSR*

>peptide 5 (42 aa)
MTTAMASTRLQSFQYLSNLSCISLAMLLKTGSSCPVPFDSSS*

>peptide 6 (39 aa)
MHSIIDHLNILFNLSPINLGVTELNKLHLETWIHDDSNG*

>peptide 7 (82 aa)
MELPLLTMDIGIAKISRAILERVGNLTVLSFHQFRISNSCIRGVSDSSRYCSSSDFEGWLLWISERYISKSRSPSPVEPGAP*

>peptide 8 (60 aa)
MGQLITLIDFFALYQLISLSHIFSMDQFICLDGLIIESNLIFLGHLSVIGGFLSHADRLEA

Sequence

>CNT30557998
TATACACAAACATGAACACCAATCCACGATGCATAACAAATTAAATACAAAACAAGGGTACAAAGTACAGACAACCAGCTGATGCATCATGCAGCTTGTA
CACGCACATCACATGCAAAGTCAGACAACACCAGAACATGATACAACAAAAGCTATTACATGACAACAGCGAGTTAAACAGAGTTCGACACAACAAGTTA
CGCCTCTACAAGACAAATATCAGAATAACAATCAGTTCACAATCTCAGCCAACAATACGCCTACAGTTACTACACTCACGATAGATGGAGCCTGAATCTG
TCCATCTAACCTATGACCCTTCAGCCTTGACCAGTGCAGAACTTGGTGCATCCTTGGCAGCAGGTGAGTACTGGAGCCAGTCTTTCGCACAGACAAGTGC
CTCCACAATCTCAGGACGAAGAGAGCTTCTATAGTCATCGAGCATGTGACTTCCTGTTCCAGCAGTGAATATGGAGCTGCCACTGCTTACCATGGACATT
GGAATAGCCAAGATATCACGGGCCATTTTAGAGAGGGTTGGAAATTTGACTGTGTTAAGCTTCCACCAGTTCAGAATATCAAACTCCTGCATACGTGGAG
TGAGTGATTCATCCAGGTACTGTTCCAGTTCAGATTTTGAGGGTTGGCTACTCTGGATCTCAGAAAGGTACATATCGAAGTCTAGAAGCCCATCACCAGT
GGAACCAGGAGCTCCTTGACTGTTATTTGCATTGGCTGGCCCATTATTCGCTTCACCTTGCTCAGCATAGGCTGGGGTCAGTGGGAGTGGCTGAGCGACA
TATTCCTTATACAGCTCATGCACAGCATCATTGACCACCTTAACATACTTTTCAACCTCAGCCCCATAAATCTTGGAGTAACTGAACTCAACAAGCTTCA
TCTTGAAACGTGGATCCATGACGACAGCAATGGCTAGCACAAGGCTGCAATCTTTCCAGTACTTGTCAAACCTCTCATGCATATCTTTGGCGATGCTACT
GAAAACGGGATCTTCATGTCCTGTGCCATTTGATAGTTCTAGCTGAAGTTTCCAGGCTTCATGGAAGAAAAGGTTTGAAGTTGGGTTTGTTGATGCCATG
ATGCTATGCGCAGAGTCATATAGCAGTTTCAGGTCTCAAGTGTAGTGAAAGCCTGCTTATAATCCAAGGCAGCCAGTAACATCAGATAAGTGGTGTTCCA
CTGGGTTGTGACATCCAGACAGAGGGTCTTCGTACTGGGAATCTCCAGCTGCAGAGCAATCTCAGCAAACTTCTCTTCACGGGCAGAAGAGGCTTTTATG
AATTTTATGCTTTCACGGATATTGTAGATAACACCGTGAATTGAAGCAATGACGTCTTGTGCGACAGCATTAAGGATGTGGGCATAGCACCTCACAACAA
ACAGCTGTCCCTTAAGCATGAGATTGTTCTTGTTGGAGAGATAATCCCTCAGATTTGCACTGTAGATGTCATGTGAGGAACATTCATTATCCAATGTGAT
GGTAAATAGTTTGTCCTTCATATTCCAGTCAGAAAGGGTCATGCTAATCGCTTCACTAAGTGCATTCTCTGAATGAGGAGATGACACCATCATGAAACTA
AGCATTCTTCGGTGTACTTTCCACTCAGAGTCGATAAACTGCCCTGCAAGTGAAACATAGCCAAGAGTCTGACTCGTAGTCCACAATCCTATGGTGAGGC
TGATCCTTCCAGGCATAGTGTTGAATGCTTGAAGCAGATTCACTTTTTCTTTCTGATAAACAGCATACACCTCTCCTTCCATCGTATCAACATCCACAAT
CTTGAAACGTGGCTGCAGGCTCTCAATAAAAGTTCCGAATGCCGGCTGTTGAACAATGTGAAGCGGGTAGTCATGCTGAATGATCATCTTCGCCAGGTAG
GAGCAACTGCGGTCTTGATCAAAAGCAGCATTTGCATAACCAGTATATCTGTATCGTCTCTTGGTTCGCCGCTCCACAGTTCCCTCACCATCATTGTCAG
TACCTCCTGCTGAAGGCAGTGCCAGCCTCTGCTCTTGATTCTTTATCTTAGGACAAGAACCCAAGGTGATGTGCCTCTTGAGATGGCTAGTCCCAGCAAT
CTTTGAGCCAGAGCTGTAAGCAAAGGTTTGCTTACAGAGATTGCAGCATGCCCGTGTGGCCCCTCCAGCGACTTCTTCAATAGTGAAGTGCTCCCATACC
AAGGACTTCTTTCTTCTCCGTCTGATTCCAGTCCGAGGGGTCGTTTCCTCAGCAACGACCAACTCATTTCCTTGTACGAAATCATCATCATGGGCCAGCT
CATCACCTTGATTGATTTCTTCGCCTTGTATCAACTCATCAGCTTGAGCCATATCTTCAGTATGGACCAATTCATCTGCTTGGACGGCCTCATCATTGAG
AGCAACCTCATTTTCTTGGGCCACCTGAGTGTCATTGGCGGTTTCCTCAGCCATGCCGATAGGCTAGAAGCTGA