Detailed information on CNT30557443


BLAST search results

BLAST vs Swiss-Prot:
sp|P17341|PLAS_PETCR, E-value = 4e-27

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30226316Panicum halliiHordeum vulgare13.9621.8884.9593forward
CNT30391774Panicum halliiTriticum turgidum20.8723.5288.49139forward
CNT30443574Panicum halliiAegilops tauschii27.9333.9484.95186forward
CNT30663028Panicum halliiTriticum dicoccoides40.0956.8183.15267forward
CNT3012376Panicum halliiZea mays28.3833.1689.95189forward
CNT30370409Panicum halliiOryza glumipatula28.6824.5284.82191forward
CNT30102318Panicum halliiOryza rufipogon29.4331.6185.2196forward
CNT30583246Panicum halliiEchinochloa crusgalli30.1823.3295.02201forward

Expression of CNT30557443

Peptides detected in this lncRNA

>peptide 1 (73 aa)
MARTVKAAAERLLATARAGLAAAKEGAVTAAEEREAIVKLVVDSLDRANKAATATAKQERERERERERESASEQ

>peptide 2 (35 aa)
MPNSIADDIYMLKQYNSMHTKHAWNLVQDGWIISR*

Sequence

>CNT30557443
ATCAGAAGGTAGGCGATGCCGAATTCAATTGCCGATGATATATATATGCTGAAGCAATATAATAGCATGCATACAAAGCATGCATGGAACTTGGTACAAG
ATGGATGGATCATATCGAGATGACTCTGATGATCTATCGATAGCAGTACAGACGTAGATAGATAGATATATATATATCAGTTGACGGTGACCTTGCCGAC
CATTCCGGCTCCTTGGTGCGGCTCGCAGTAGAATCCGTAGGTTCCCGGCACGGTGAGCGTACTCCTCCTGCGAGATCTTGGCGGCGTCGACACCGCTGGG
CACCTCGTCCTCGTCGAAGACGACGTTGTGTGGGTACCCGGCGTTGTTCTTGAAGGTGATTGCCTCGCCGGCCTTGACGGTGAACTCGCTGGGCTCGAAG
ACGAGGACGCCTCCGGTGGCGCCCAGCAGCACCTCCTGGGCCATGGCGCGCACGGTGAAAGCAGCAGCAGAGCGCCTGCTGGCAACGGCGCGGGCTGGCC
TGGCAGCCGCGAAGGAAGGGGCGGTGACGGCGGCAGAGGAGAGGGAGGCCATTGTTAAGTTGGTGGTAGACTCACTAGACCGAGCAAATAAAGCTGCAAC
TGCAACTGCAAAGCAAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGCGCGAGCGAGCAAGC