Detailed information on CNT30557319


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30673569Panicum halliiSetaria viridis17.2761.992.31195forward
CNT30374052Panicum halliiArabidopsis thaliana6.2925.1885.9271forward
CNT30350530Panicum halliiEragrostis tef21.6123.3785.25244forward
CNT30596912Panicum halliiOryza meridionalis7.792186.3688forward
CNT30369646Panicum halliiOryza glumipatula19.9342.2980.44225forward
CNT30148536Panicum halliiBrachypodium distachyon7.7140.6589.6687forward
CNT30583440Panicum halliiEchinochloa crusgalli22.8549.4392.25258forward
CNT30115905Panicum halliiOryza nivara19.9342.0680.89225forward

Expression of CNT30557319

Peptides detected in this lncRNA

>peptide 1 (67 aa)
MIRSLRAPSRTPDHAARRRATTWTRTSLAQRTRRARLDEQTSRAPAQTKDTDTIKFNRADTYIKRER*

>peptide 2 (81 aa)
MVTLKKGHSLYISLSFWMFLLSFLMADWNAAPTPSHTGRWNLVCVHEKIQGIARSDSMPPLGFLFAGRLPMFILPYSVSGVA

>peptide 3 (59 aa)
MPRADAPRRGPARLWLNGQDAPGSMNKQAELQLKQKTRTQLSLTEPTRTSSVKDKAQIS*

>peptide 4 (59 aa)
MPAAIPFMVRMSVSSIPGGYSLAGFSSTSPAGFFSSENSLDSGGCFFTWKFGSLISFRV*

>peptide 5 (43 aa)
RCFLPRNPRRFFCIDSFIYIDYYKPTVKRKGRARSGRPCMRAP*

Sequence

>CNT30557319
CTCGGTGTTTTTTGCCGCGTAACCCGCGACGTTTTTTCTGTATTGATTCCTTTATTTATATCGATTATTACAAACCGACTGTGAAAAGGAAAGGCAGAGC
TCGGTCTGGCCGTCCCTGCATGCGCGCGCCATGATCCGCTCCTTGCGTGCGCCATCCCGCACGCCAGATCATGCCGCGCGCCGACGCGCCACGACGTGGA
CCCGCACGTCTCTGGCTCAACGGACAAGACGCGCCCGGCTCGATGAACAAACAAGCCGAGCTCCAGCTCAAACAAAAGACACGGACACAATTAAGTTTAA
CAGAGCCGACACGTACATCAAGCGTGAAAGATAAAGCGCAAATAAGTTGAGTGTGAATTAAAAAGGATACATGCACATCGACACGCTGGTGCCTTGATGA
GCAGTCTGCAGTGAGGAGCGGAGCAGAGCACCCGGCCTCCTAGCCGGTGTTCTGCATGCCGGCGGCAATACCCTTCATGGTGAGGATGAGCGTGTCCTCC
ATCCCCGGCGGGTACTCGCTCGCCGGGTTCAGCTCCACCAGCCCGGCGGGCTTCTTCTCGTCGGAGAACTCCTTGGACAGCGGCGGCTGCTTCTTCACCT
GGAAGTTCGGGTCCCTCATCAGCTTCAGGGTGTAGGCCTGGAACACGTTCAGCGTCGTGATGTAGGGATCGCCTTCGAGGATTTCCTTGTGCCCAGCGAT
CTGCATATATCACAGATCAGGAAGTCACAGAATCATCATCGTGCATCAAGTTTCATATGAAAATGCTGTGAATTTTTCAGAATCTTTTTTTTTGTTTGTT
TCAGTAGTATCAGTACCTGCAGGAGAAACTGCTGCGTCTCCAGGTACTTGTTCCTGAGCTGCTCCCCGAAGGGCTTGAGGTCAATGGTGACCCTGAAGAA
GGGCCACTCGTTGTACATCTCCTTGAGCTTCTGGATGTTCTTGCTGTCCTTCTTAATGGCAGACTGGAACGCGGCGCCGACGCCGAGCCACACGGGGAGG
TGGAACCTCGTCTGCGTCCACGAGAAGATCCAGGGGATCGCGCGGAGCGACTCGATGCCGCCCTTGGGCTTCCTCTTCGCCGGCCGGCTGCCGATGTTCA
TCCTGCCGTACTCCGTCTCAGGCGTAGCC