Detailed information on CNT30557292


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30674125Panicum halliiSetaria viridis36.7948.0786.76287forward
CNT30521394Panicum halliiSetaria italica37.448.0986.99292forward
CNT30193220Panicum halliiSecale cereale32.6928.7886.67255forward
CNT30474298Panicum halliiSaccharum spontaneum38.4638.7690.33300forward
CNT30140847Panicum halliiLolium perenne32.1844.0484.46251forward
CNT3016300Panicum halliiZea mays29.4937.1689.57230forward
CNT30368707Panicum halliiSorghum bicolor29.4929.5391.74230forward
CNT30583511Panicum halliiEchinochloa crusgalli29.3625.9991.7229forward
CNT30497176Panicum halliiDigitaria exilis38.3329.7587.96299forward

Expression of CNT30557292

Peptides detected in this lncRNA

>peptide 1 (59 aa)
MPAAIPFMVRMSVSSIPGGYSLAGFSSTSPAGFFSSENSLDSGGCFFTWKFGSLISFRV*

Sequence

>CNT30557292
CAAAAGACACGGACACAATTAAGTTTAACAGAGCCGACACGTACATCAAGCGTGAAAGATAAAGCGCAAATAAGTTGAGTGTGAATTAAAAAGGATACAT
GCACATCGACACGCTGGTGCCTTGATGAGCAGTCTGCAGTGAGGAGCGGAGCAGAGCACCCGGCCTCCTAGCCGGTGTTCTGCATGCCGGCGGCAATACC
CTTCATGGTGAGGATGAGCGTGTCCTCCATCCCCGGCGGGTACTCGCTCGCCGGGTTCAGCTCCACCAGCCCGGCGGGCTTCTTCTCGTCGGAGAACTCC
TTGGACAGCGGCGGCTGCTTCTTCACCTGGAAGTTCGGGTCCCTCATCAGCTTCAGGGTGTAGGCCTGGAACACGTTCAGCGTCGTGATGTAGGGGGTGC
GCAGCCGCAACCCCTGCTTCAGGTAGGGATCGCCTTCGAGGATTTCCTTGTGCCCAGCGATCTGCATATATCACAGATCAGGAAGTCACAGAATCATCAT
CGTGCATCAAGTTTCATATGAAAATGCTGTGAATTTTTCAGAATCTTTTTTTTTGTTTGTTTCAGTAGTATCAGTACCTGCAGGAGAAACTGCTGCGTCT
CCAGGTACTTGTTCCTGAGCTGCTCCCCGAAGGGCTTGAGGTGGAACCTCGTCTGCGTCCACGAGAAGATCCAGGGGATCGCGCGGAGCGACTCGATGCC
GCCCTTGGGCTTCCTCTTCGCCGGCCGGCTGCCGATGTTCATCCTGCCGTACTCCGTCTCAGGCGTAGCCTGGCACGTAC