Detailed information on CNT30556906


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30693805Panicum halliiOryza sativa13.6220.6389.8779forward
CNT30521167Panicum halliiSetaria italica3544.3284.24203forward
CNT30553860Panicum halliiOryza glaberrima13.6220.9589.8779forward
CNT30682490Panicum halliiTriticum urartu12.2423.9991.5571forward
CNT30349660Panicum halliiEragrostis tef16.2123.9895.7494forward
CNT30595554Panicum halliiOryza meridionalis12.5927.9794.5273forward
CNT30369218Panicum halliiOryza glumipatula12.5920.0594.5273forward
CNT30576573Panicum halliiOryza barthii13.2827.989.6177forward
CNT30595297Panicum halliiEragrostis curvula7.5920.0993.1844forward

Expression of CNT30556906

Peptides detected in this lncRNA

>peptide 1 (91 aa)
MMDGAVGKILFRRCYYILRRGASPFLLVLHGGGAWPPQLQLQQEQPQLVPHLQVLQSQPPLSGTSCSCIQVDHTHSSDIRSAATDSVMELN*

>peptide 2 (87 aa)
MAQLARSYLDAATIYYAGGLLLSSSCSMAAAHGRLSCSCSRSSRSWCRTCRCCSRSRRSREHLAAAYRWIIHIRQIYDQLLQIPSWN*

>peptide 3 (66 aa)
MAASVAAAAGAAAAGAALAGVAVAAAALGNILQLHTGGSYTFVRYTISCYRFRHGIELMISAIRFD*

>peptide 4 (34 aa)
SAEIHILKVACTRRTHEIDERHASSITRRSDNPS*

>peptide 5 (31 aa)
MHEEDTRDRRTACIVDHQTFRQPQLRHGRRP*

Sequence

>CNT30556906
TAGTGCTGAAATACATATATTAAAGGTGGCATGCACGAGGAGGACACACGAGATCGACGAACGGCATGCATCGTCGATCACCAGACGTTCAGACAACCCC
AGCTGAGACACGGCAGGCGACCATGAATGTTACGACACGGTAGATGATGGATGGCGCAGTTGGCAAGATCTTATTTAGACGCTGCTACTATATACTACGC
CGGGGGGCTTCTCCTTTCCTCCTCGTGCTCCATGGCGGCGGCGCATGGCCGCCTCAGTTGCAGCTGCAGCAGGAGCAGCCGCAGCTGGTGCCGCACTTGC
AGGTGTTGCAGTCGCAGCCGCCGCTCTCGGGAACATCTTGCAGCTGCATACAGGTGGATCATACACATTCGTCAGATATACGATCAGCTGCTACAGATTC
CGTCATGGAATTGAATTGATGATATCAGCTATCAGGTTCGATTAGATTCCTACCCGTTGCATCCGCCGCTGCACTTGCAGCCGGAGCCGCACCCGCAGTT
GCCTCCGCAGCAAGACATGCTGATCTTGTTGATCACGAGCAGGAGCTGGTGCTGAAGAAGGTGCGGTGCTTCTTGTGCTC