Detailed information on CNT30556620


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONZMAT000139, E-value = 9e-62

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30694973Panicum halliiOryza sativa22.4626.2894.12221forward
CNT30671877Panicum halliiSetaria viridis20.3310094200forward
CNT30520655Panicum halliiSetaria italica23.7894.3592.31234forward
CNT30180108Panicum halliiSecale cereale22.2610094.06219forward
CNT30221546Panicum halliiHordeum vulgare21.6593.4294.84213forward
CNT30554471Panicum halliiOryza glaberrima22.4640.1194.12221forward
CNT30439818Panicum halliiAegilops tauschii21.5470.988.21212forward
CNT30658643Panicum halliiTriticum dicoccoides21.9548.7690.28216forward
CNT30681546Panicum halliiTriticum urartu21.0494.5293.72207forward
CNT30721558Panicum halliiTriticum spelta22.7610088.39224forward
CNT30341741Panicum halliiEragrostis tef22.5636.6387.39222forward
CNT30596654Panicum halliiOryza meridionalis21.1428.6195.19208forward
CNT30370660Panicum halliiOryza glumipatula22.4638.594.12221forward
CNT30104991Panicum halliiOryza longistaminata22.3692.8390.45220forward
CNT30102628Panicum halliiOryza rufipogon22.4617.4294.12221forward
CNT30577143Panicum halliiOryza barthii22.4643.5994.12221forward
CNT30117165Panicum halliiOryza nivara21.7547.7793.93214forward
CNT30593977Panicum halliiEragrostis curvula22.3699.190.45220forward

Expression of CNT30556620

Peptides detected in this lncRNA

>peptide 1 (35 aa)
MRRRYIVRSAGAGNRKKGSHKDYYITMPCLLLLTW*

>peptide 2 (64 aa)
MAWLYSSAKTMAIDQAYAGQRGDTTYTRGGSSSAGCRPRTTSRARSRCRRGRRRVPCRRGTRRS*

>peptide 3 (85 aa)
MQGKGGTLLTPGEDLPALVVALAPLPEHDLGAVVDAAVCLVAVERVEVEVDVVDHADAAEALADVLALRPQHGLVLVVRVVGHQLH

Sequence

>CNT30556620
CCCTTATTCGATTCGATTCCCGATAACTCGGTTTGATTGGGCCTGATTTAGCCCAGCTCTATAACCAGCCAGCTTCTCCCTCTACTTGGTGATTCCAACA
CGAAGGCTCAACTTTCAGCTCAAAAGAACACCAAGGCCCAGTTTGAGTCGTAGTTTGTCACTTTGTTGTGTTCCTTTTGTTGTTTTTTGGGTCTCGCCGG
CTCGCTGGATGGCTCACACGATTCCCCCTCGAGTGATTTGACGAGCACAAACGTTGGTACAGCAGAATTCAGATGCATGTAAGCAAAGCGAGATCATCCA
TTCAGTAGAAGAAAGTAGATGAACAGATGACAAATGAGACGACGATACATAGTTCGGAGTGCAGGCGCCGGAAATCGAAAGAAGGGTAGCCACAAGGATT
ACTACATCACAATGCCCTGCCTACTACTCCTCACATGGTAAGACCAGGCTCACAAAAGGGACAGGCCACTAGCTAGTCACACCGTGACTGACGGTCTGAC
GCAAATACCACTCTGAAACATGGCACACGGTTTTATTGCAGAAATCTCTTCTGTTCTTATTAGGCAGGTAAGGTAGCAGCTCCTTTCAATCCAGAAAGTT
CCTCCGTCACCATCTCTGCAAACGCAAGCAACGATTGGAAAACATCAGATTTCAAAGGATGTAAGGCAGGCCATCAATGGCATGGTTGTACAGTTCGGCG
AAGACCATGGCCATTGATCAGGCATATGCAGGGCAAAGGGGGGACACTACTTACACCAGGGGAGGATCTTCCAGCGCTGGTTGTCGCCCTCGCACCACTT
CCAGAGCACGATCTCGGTGCCGTCGTGGACGCCGCCGTGTGCCTTGTCGCCGTGGAACGCGTCGAAGTTGAGGTAGATGTTGTTGACCATGCGGATGCAG
CGGAAGCCCTTGCCGACGTCCTTGCTCTCCGTCCACAGCACGGACTCGTCCTGGTAGTCCGGGTTGTAGGGCACCAGCTTCACC