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Detailed information on CNT30556352


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30670924Panicum halliiSetaria viridis80.81102.8386.4581forward
CNT30519875Panicum halliiSetaria italica94.44102.7286.89679forward
CNT30395922Panicum halliiTriticum turgidum16.9758.9481.15122forward
CNT30139784Panicum halliiLolium perenne18.2224.2188.55131forward
CNT30364692Panicum halliiSorghum bicolor2125.6893.38151forward
CNT30369722Panicum halliiOryza glumipatula17.662587.4127forward
CNT30100580Panicum halliiOryza rufipogon18.2229.0588.55131forward
CNT30575237Panicum halliiOryza barthii18.2230.1187.79131forward
CNT30584006Panicum halliiEchinochloa crusgalli30.3243.1793.12218forward
CNT30495763Panicum halliiDigitaria exilis92.2158.8887.03663forward

Expression of CNT30556352

Peptides detected in this lncRNA

>peptide 1 (61 aa)
MSKGSGAAALVTGGGTSVEAGPDADANAGAGAETGTAVGTIGTLTGGEGTAGTTSSGAGIL*

>peptide 2 (48 aa)
MFTSIKLVVFVLLLSGGRFRLIAAFLLLSLAKEGSSTYRCNYSSEFKVR

>peptide 3 (31 aa)
AEAHLTISSSSARSGSHSLTPHRSSTDCSRL*

Sequence

>CNT30556352
GCAGAGGCACATCTTACCATCTCCTCCAGCTCTGCTAGAAGTGGATCCCATTCGTTGACGCCACACAGATCATCAACGGACTGCTCCAGGTTGTAATTGT
TCTGCCTAAGGATTTCCTTGTTCAGATCAATCTGCCTAAAGCCCATTTCCTCCAGCTCCCTCAGCAGCTTCTCTTCATTGTGACCATCTATGTCAAAAGG
CTCAGGAGCTGCGGCACTAGTTACAGGTGGAGGCACAAGCGTAGAAGCAGGGCCAGATGCAGATGCGAATGCAGGTGCAGGTGCGGAAACAGGCACAGCT
GTAGGCACGATAGGCACATTAACAGGTGGTGAAGGTACAGCCGGCACAACAAGCTCAGGTGCAGGCATACTATAAGAAGGCACAAAAGCAGCTGCAGTTG
CACTGGACATGGGAACATCAACAGTAGGGTTTGCAGGAGCTGCTGCAGGCATAGAGGTAACAACAACAGGAGCAGGCTGAGATTTCTTAGGCTCTGGAAC
ATCCATCGGATAGAAGTGAAACTCTTTAGTACGTTTGGCATGTGCACTAAGGGTCGTCTCAGCAGGCTCAATGTTCACATCAATTAAATTAGTTGTGTTT
GTACTATTGCTTTCTGGAGGCAGATTCAGATTAATAGCAGCATTCCTGTTATTGTCATTAGCAAAGGAAGGATCTTCCACCTACAGATGCAATTACAGTT
CAGAATTTAAGGTCAGAAA