Detailed information on CNT30556231


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30184327Panicum halliiSecale cereale6.7166.6785.92142forward
CNT30398990Panicum halliiTriticum turgidum5.929.2188125forward
CNT30459409Panicum halliiSaccharum spontaneum8.5551.1393.92181forward
CNT30583813Panicum halliiEchinochloa crusgalli3.7323.9493.6779forward
CNT30495922Panicum halliiDigitaria exilis16.8226.1482.58356forward

Expression of CNT30556231

Peptides detected in this lncRNA

>peptide 1 (45 aa)
MNMLLKVNQYSSILTNCTCFALGLTCLLNLHAKIWNYNAAYLVIQ*

>peptide 2 (51 aa)
LVANRQHIESQVLIEPSTPRPTLHSRHLFRLKSRAPTWPRAQPQTTAPRRN*

>peptide 3 (55 aa)
MRQELHYLQGSHKINWKIILVAFLQVVQLLPQACCLPLPELQVKQEVFSVSEPQK*

>peptide 4 (58 aa)
MNLGGVLALTSFSDIEDVALRCVASTADCCKKFYIVAGDVHFFFIHVFSSLSFCARLL*

>peptide 5 (31 aa)
MIPVLHKCQLHRLIVLVVPAFDILMFFILCK*

>peptide 6 (85 aa)
MSIFFSFMYFLLSHFVRVCCKTEPMLLTVHLQISCPVFFFFFVCVCVWTSRCLATSYVGQAGVYQSILTILKMIILVSVCANNPL*

Sequence

>CNT30556231
GTTTAGTCGCAAACAGGCAGCATATAGAAAGCCAGGTCCTGATTGAACCGAGTACTCCCCGTCCCACGCTCCACTCCCGACACCTGTTCCGTTTAAAATC
CCGGGCGCCGACGTGGCCGCGTGCGCAGCCACAAACCACCGCTCCCCGCCGCAATTAACAACCCGCCAATCAGCTCGGCGCGGCCCAAATGCCCCGCTAA
TCCCCCGCTGAGCCGCTCTCTCCTCCCTCCGCCAAAAAGCTAATCCCCTCGCTTTTCCTATCTCCACTTGGGGGGTTGGGGTTCTAGACTCGTCGATTCG
GTTTCGATCCTTCTAGACACTTCGCCGCGCCCGGCTATAAAAGCCGGCACCTCCCGGGGCCATCGATCGGCACATCAGCACTCGCACGCAGCCCTTTGCT
CATTGGCCGGGGTTGGGTTCGAGACTCGTCGATTCCAAGCTATTGGTGTATTGCATGCGGTGGCACCAAGCATGAGGCAGGAACTGCATTACTTGCAAGG
AAGTCACAAAATCAATTGGAAGATCATACTTGTGGCTTTCTTGCAAGTTGTGCAGTTGTTGCCTCAAGCTTGCTGCCTCCCTTTGCCAGAGCTACAAGTA
AAACAAGAAGTATTCTCAGTTTCTGAGCCGCAAAAATAATTTTGGAAAAACAATCGAGAAATGTATTGCATAATATATGAATATGCTGCTAAAAGTTAAT
CAATACTCATCGATACTCACTAACTGCACATGCTTTGCATTGGGGTTAACATGCCTGCTTAATTTACATGCAAAGATTTGGAACTATAATGCTGCATATT
TAGTTATACAGTAGATATCTGAGCATGTATGCTATGGTCTCTGTTACTGTAAATTTAATAATCGATACTGCTCCACTTCATCCAATGTTAACTAAGTTCA
GGGGTTTGTAGCTGATCATTATGTTGGAACAATAAGTAGAGTAACATTGTTGCATTACAGTCACCCAACCTGATTTCAAGGTAAACTGAGTTTAGTTTAT
CTGTTTTCCTAAAGAATGTTGTCTCTTGCATTCTCTCATGAGCATTTGTAGTTTGAGTTCTGTGACATTGTGATGTTCTCTTCTTAATATAATGCTCTCC
TGCTTTTTCTAGGGGAAAAAAACATTGTGATGTCTTCTTTTACATTTAATGATATTCTGATTCTGTTAGTGAATAGTATCATAGTTCCAACATCTATAAA
GCTTGATATTGCCTAACACAATGGTGGAGCAGCTAAGTGTAAAAGCAGATACATGTCATAATCTACATTACCGTGTAGCCTGTAGGTGATGATCTGGTAT
TTTCTTGATTATTAGAAAGGAAAAGTCATCAGGAACAGACTGGCACGGAATGATGCTTTGCAGGTGGTCTATTAGCACCGTATATACCTAATACAGCTCT
TCCAGCTGACATGAATCATGATACCAGTCTTACACAAGTGTCAGTTACATCGACTAATTGTTCTGGTTGTTCCAGCATTTGATATTTTGATGTTCTTTAT
CTTGTGCAAATGACATAGTTTCAGTTAATTTCTTAACAGATGTATTTTAAAGTGTGCCATCTCCTTTTGCGCCAGTTTCCGTAGCAGGGATGGTCTGAAC
TATCACTATGCCCAGCTCTAAAGCATGAATGGAAGTTCAGATTGTTAGCATATTCAGTAATCAGTGTGCCCACTTCTAAACTATTGGGATGAACCTTGGG
GGTGTGTTGGCTTTGACCTCGTTTTCGGACATAGAAGATGTTGCTCTGAGATGTGTGGCTTCGACAGCTGACTGCTGTAAAAAGTTCTATATTGTTGCGG
GTGATGTCCATTTTTTTTTCATTCATGTATTTTCTTCTCTCTCATTTTGTGCGCGTTTGTTGTAAGACCGAACCCATGCTACTTACAGTACACTTGCAGA
TAAGCTGTCCTGTTTTCTTTTTTTTCTTTGTGTGTGTGTGTGTGTGGACCAGCAGGTGTCTGGCAACATCCTATGTTGGACAAGCTGGGGTATACCAGTC
CATTCTGACTATATTGAAAATGATAATCCTGGTTTCTGTATGCGCAAACAACCCCTTGTAGACACACTAACCTTATACTCTCTACGATCACAAGTACAAG
CTTGCATTAGCATGGAT