Detailed information on CNT30555942


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30690462Oryza glaberrimaOryza sativa35.7444.0799.58238forward
CNT30369360Oryza glaberrimaOryza glumipatula35.7430.9199.16238forward
CNT3099818Oryza glaberrimaOryza rufipogon35.7428.599.58238forward
CNT30574577Oryza glaberrimaOryza barthii39.7933.29100265forward
CNT30115572Oryza glaberrimaOryza nivara35.7425.9399.58238forward

Expression of CNT30555942

Peptides detected in this lncRNA

>peptide 1 (46 aa)
MGKVCLLVIDENLFNGILLVAIVVIMFMLLAGGGAPPPRRRGFCVY*

>peptide 2 (49 aa)
MSWRTLQFIKVELLVASGNGGLSVELLCNLYQYILYIVTTDIYLRFIASY

>peptide 3 (33 aa)
MASSSSPSSSSCSCCSPAAARRRRAAAASACTD*

Sequence

>CNT30555942
CTCTCACACACACCTCGATAAGTCGATATAAATAGAGTAAGATGATTAGTGTAGAGAGAGATCATTATTAGCATTCGATCTGCTTCTTCGCCATCGAAGT
AATTAATCAAATCGGAGGAGATCATTAGCAAATTATCAGCTTGGCTTCATGGGGAAGGTGTGCCTTCTCGTCATCGACGAGAACCTCTTCAATGGCATCC
TCCTCGTCGCCATCGTCGTCATCATGTTCATGCTGCTCGCCGGCGGCGGCGCGCCGCCGCCGCGCCGCCGCGGCTTCTGCGTGTACTGACTGACCGGCCG
GCGAGTGAAACCATGAACAACACTGCAGGTGCAGGTCGAGCTTGATTTCTAAGCTTTTAGTTCTTGTGTTTTTTTTTCTCCTTTTTTTTTCTTTTTCTTT
TGTCCGTGCGATGAAGCTAGCTCGTGATTTCTTCTTCTTCATGTTTTCGGGAGTAATTAATTAACGTGTTCTTGTGTAGAAATATATGTGAAGGATTTTC
TGTTTGATCAGGGCATGTCTTGGAGGACTTTGCAGTTCATAAAAGTTGAGTTGTTGGTGGCAAGTGGCAACGGTGGTCTCTCTGTAGAATTGTTGTGTAA
TTTGTATCAATATATATTGTATATAGTAACAACGGATATTTATTTGAGATTCATTGCATCTTACAG