Detailed information on CNT30555812


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30695699Oryza glaberrimaOryza sativa60.3599.3899.17481forward
CNT30102962Oryza glaberrimaOryza rufipogon3419.5498.89271forward
CNT30577568Oryza glaberrimaOryza barthii38.5265.4699.67307forward

Expression of CNT30555812

Peptides detected in this lncRNA

>peptide 1 (47 aa)
SAFLPPVIPAVSLSSLRRVGRSPVAGAACPALSGRREAAIIAGGTRR*

>peptide 2 (53 aa)
MCLLRWLQRSDTLVDRNSSLLSPKELYMVLHVPKSQAFFLCKVQVQAHGPDCSL

>peptide 3 (63 aa)
FSFPSSRNPRRLSLLAPAGWPVAGRRSRLPCPLRPAGSRHYRWWNAALTEGCGWRAARPQNRG*

>peptide 4 (32 aa)
MPRSPSFPANFVPLLFRCRRSDRSVVDQFDQC*

>peptide 5 (34 aa)
MQKKQKAAAAAASACAVHVLAQVATKVGHTRGSQ*

Sequence

>CNT30555812
ATTCAGCTTTCCTTCCTCCCGTAATCCCCGCCGTCTCTCTCTCCTCGCTCCGGCGGGTTGGCCGGTCGCCGGTCGCCGGAGCCGCCTGCCCTGCCCTCTC
CGGCCGGCGGGAAGCCGCCATTATCGCTGGTGGAACGCGGCGTTGACCGAGGGATGCGGGTGGAGGGCGGCCCGGCCGCAGAACAGGGGATGAATGCGGT
AGGGGACGCCGACGGCGGCGGTGGCTAGGGTTGGGGAACTCACTGCTGCTCTCCTTCGATCGCGCCGCCGTTGCCCGTCGTCGAGTTGGGCGACGACCAG
GGGCAGGTATACATGCCTCGTTCCCCATCATTTCCTGCCAATTTTGTACCTCTTCTGTTCAGATGTCGTCGTAGTGATCGTAGTGTGGTTGATCAGTTTG
ATCAATGTTGATTGTATGGAAGAACACCCAGATCCCTTCATAATTTTGGAGCTATAATAATTTGGTGAATTGATTGGTGTGATGATAACCGACTACTAAC
TCTAAGATGGAGATCACAATGAATTGCTAGTTTGCTACTGCTCATTTTCTGTGCTAGTTCTTGGCTTACTACAAATTAACAATGCAAAAGAAACAGAAGG
CGGCGGCAGCAGCAGCAAGTGCTTGTGCAGTACATGTGCTTGCTCAGGTGGCTACAAAGGTCGGACACACTCGTGGATCGCAATAGCTCTCTCTTAAGTC
CTAAGGAACTATATATGGTTCTACATGTTCCCAAATCACAGGCATTTTTTCTCTGCAAAGTACAGGTTCAAGCACATGGACCTGATTGCTCATTGCC