Detailed information on CNT30555702


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30697684Oryza glaberrimaOryza sativa64.0697.999.73745forward
CNT30672806Oryza glaberrimaSetaria viridis12.0446.3687.86140forward
CNT30371513Oryza glaberrimaOryza glumipatula91.9210099.061069forward
CNT30104336Oryza glaberrimaOryza rufipogon96.0410099.461117forward
CNT30578504Oryza glaberrimaOryza barthii94.5899.4699.181100forward
CNT30604831Oryza glaberrimaOryza punctata28.255.8890.55328forward

Expression of CNT30555702

Peptides detected in this lncRNA

>peptide 1 (33 aa)
MIRDIMSMMGRVHVCMYVAVPHHNHTIHTSKLN*

>peptide 2 (37 aa)
EKGSKTNLKFNLPQIPFRSNHRSTMFKHKTQLRLHHY*

>peptide 3 (88 aa)
MTPWRGRRRKAQLGCLVEQLLLQVQLALHPLSSLLLPMVLEEQPQIQPVLHLPSRFRLVLEQECQRLRSCWHLQQFSSPHRCLLEHLR*

>peptide 4 (30 aa)
MMIRWGVSSSSSGALHGRGTSRQLPVVDRG*

>peptide 5 (38 aa)
MYVCCCATPQSYHTYKQAKLMQSLITGCHPATSVPWSI*

Sequence

>CNT30555702
GTGAAAAGGGCTCGAAGACGAATTTGAAATTCAATCTCCCCCAAATTCCATTTCGTTCAAACCATCGATCTACAATGTTCAAACACAAGACACAACTTAG
ATTACATCACTACTAGTATTACACAGGCATTACCGGGGAATATATCCAAACCACCCTGCCTGATGGGTTGATGGATAATCTTAAATGGATGGATAAGAGG
ATGCACATCCACATCCAACCTTATTCATAGATAGCTAATCAAGTCATTACACATAATACAGCACAGGTACAAACACAGACAGACGGACGGACAGACGACG
GTATATATGTCCTAAGATTAATGTGCTTACAGCAAGTTAGGCATGATAAGAGATATTATGAGCATGATGGGTAGGGTACACGTATGTATGTATGTTGCTG
TGCCACACCACAATCATACCATACATACAAGCAAGCTAAACTGATGCAGAGCCTAATAACCGGCTGTCACCCAGCAACGTCAGTTCCTTGGTCGATTTGA
TTACACAATGCAAATGCGAATGATTCCTAAAGGGCGTACATCACGGACAAGGGGAGGAGGATGATGATTCGTTGGGGGGTTTCATCTTCATCTTCAGGTG
CACTTCACGGCAGAGGCACCAGCCGGCAGCTGCCCGTTGTTGACAGGGGATGACTCCTTGGCGGGGGCGGCGGCGGAAGGCTCAGTTGGGTTGCTTGGTG
GAGCAGCTGCTGCTTCAGGTTCAGCTGGCTTTGCATCCTCTTTCTTCTCTCCTCCTTCCGATGGTGCTGGAGGAGCAGCCTCAGATTCAGCCGGTTTTGC
ATCTTCCTTCTCGGTTCCGGCTGGTGCTGGAGCAGGAGTGTCAGCGTCTGCGGTCTTGCTGGCATCTTCAGCAGTTTTCATCTCCACATCGGTGTCTTTT
GGAGCATCTTCGCTAGGGGCCTCCTTCGCCTCTTCAGCAGGCTTTGTCTCTACATCAGTCTCCTTTGGAGCATCTTCGCTAGGGGCCTCCTTGTCAGCTT
CAGCGTCTTTCGCTTCTTCATTTTCGGTGGCCTCCTTTTTCTCCTGCTTGCCCTTTCTGCCAGATGAGTTCCTAGAACGTTTCGGGATCTTCTCCCCTTC
TGGGCTATCGAAAGCCTTAACTTTCTCGCTAATGCGAGCAGAGCGCCTTGGAGTATCACCTGT