CANTATAdb - search

Detailed information on CNT30555637

BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONORUT001792, E-value = 3e-159

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30106461	Oryza glaberrima	Oryza longistaminata	67.12	18.92	88.94	443	forward

Expression of CNT30555637

Peptides detected in this lncRNA

>peptide 1 (52 aa)
KKLKNYHLTTMKILIIKNFHIRRTDKRCHGNLGFVFFWDRGSNFFLDGGSKS*

>peptide 2 (33 aa)
MEPKVSKLETIKSGVIITAGSWFNTCTYGILTF*

>peptide 3 (41 aa)
KTKKLSSNNNENTNYKKFSYKTDRQTLSRKSRVCLFLGQRE*

Sequence

>CNT30555637
AAAAAACTAAAAAATTATCATCTAACAACAATGAAAATACTAATTATAAAAAATTTTCATATAAGACGGACAGACAAACGTTGTCACGGAAATCTAGGGT
TTGTCTTTTTTTGGGACAGAGGGAGTAATTTTTTTTTGGACGGAGGGAGTAAGAGCTAAGCTACTTGCTACTACAGCTGTTGTTGCTCTTCTTAGCTGAG
CCATACTACTCTACTACTGTTGCAACTGCTGATAATGCTGTTCCTCGAGGTCGTCTCCCCAGCCAAAGCAACATGATGGCTAGTCTACTAGCTTGGCTAA
TATTTGTATGTAATTTGTGAGGGCATGGTGATGCAGCTGCCTGCATGTCGGTTTGGAAAAGGACTTGCTGCCACCTCATTTTTCACCTAATCAATTTGGG
GTGAAAAAAGTAATTTCCTCTTTGATGTCATTTTGGTGATTGCATGGAACCTAAAGTCAGTAAATTAGAAACTATTAAGAGCGGCGTTATAATTACAGCA
GGAAGTTGGTTTAACACGTGTACTTATGGAATTCTTACATTCTAGTCCTTAAGGTTTTATAATATTTAAGATTTTACTAGAGCTCGAGGACTGATTTGTA
ATTGCTCTATGACTGAAGAGTTTTTCTGAAAAATAAATAATTATTGAATCTTTGACTGAG