Detailed information on CNT30555624


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30107781Oryza glaberrimaOryza longistaminata44.9715.8495.31469forward
CNT30102048Oryza glaberrimaOryza rufipogon16.1152.6694.05168reverse complement
CNT30574676Oryza glaberrimaOryza barthii21.9622.6189.08229forward

Expression of CNT30555624

Peptides detected in this lncRNA

>peptide 1 (77 aa)
QVGPVPGPHTVDPVHRLPPLSPRTPLGPPLSRAPAQLARPRMQIPLGRTNAARGSLIHIPHPFSFPRNLINPFSFVS*

>peptide 2 (87 aa)
PSGPRPGTPHSGSGAPAPPSLSPHASWAATLPRAGPIGSATHANPLGPHQCRPRKSNSHPSSIFFSKEFNKSFFLCFINQFLIPKFP*

>peptide 3 (32 aa)
MGMLPPAPTCRRRRCTFSTCWLSSRACFTSTE*

>peptide 4 (48 aa)
MGIVRNHACHSAIVSDPCVHLYCLSCSGCLLIWDLLLHRDLSVPSHTA*

>peptide 5 (56 aa)
AKWAPSRDPTQWIRCTGSPLSLPARLLGRHSPARRPNWLGHACKSPWAAPMPPEEV*

Sequence

>CNT30555624
GCCAAGTGGGCCCCGTCCCGGGACCCCACACAGTGGATCCGGTGCACCGGCTCCCCCCTCTCTCTCCCCGCACGCCTCTTGGGCCGCCACTCTCCCGCGC
GCCGGCCCAATTGGCTCGGCCACGCATGCAAATCCCCTTGGGCCGCACCAATGCCGCCCGAGGAAGTCTAATTCACATCCCTCATCCATTTTCTTTTCCA
AGGAATTTAATAAATCCTTTTTCCTTTGTTTCATAAATCAATTCCTTATTCCAAAATTTCCATAAACTATTTCCTTTGGTCCCGCACGTCAGTGACTGTC
AATAATATTCTTAAGAATATTATTTCTATAAATTCCATAAACCATTTCTCGTCTTCCAGAAATTCCAATTAAACTTCCAAAATTCATATCTCCTCAACCG
CTCGTCCGATTGACTCCGTTCCACTTCCAGTTTTTCTCTAAAATTGAGATCTATTTAATGGCACTATTAATTAGCCTAAATAGGATTTCTCTTTTGGTCC
TTGTTTAGGTTTTTGATTGTTTGCGTATAGTCGCGGTTACCGGATTTTCGTCGATCGCGGGTTTTCTTGAAGATTCGTGAAGCTTCGTGAAGACCTTGAG
CAAGGGCATCCAGTGCCATTGCAGGTGGATCAATATCGAGTTTCTACGGAATCGGTCGTTTTCTATCAACAGCGTTCAGCATCGCGGAGCCTCCTGATGG
GTGCAACCGTCTAGTGCGATGGGCATCGTTCGTAATCACGCATGTCATAGTGCCATTGTTTCGGATCCTTGTGTTCATCTCTATTGTCTTTCCTGTAGTG
GTTGTCTACTCATTTGGGATTTGCTTCTCCACCGCGATCTCTCTGTACCGTCTCACACGGCGTGACTTGCGCTTGGGCAGCGGCGATGGGGATGCTGCCG
CCAGCACCAACCTGCAGAAGGCGGCGTTGCACGTTCTCTACGTGCTGGCTCTCGTCCAGGGCGTGCTTTACTTCTACAGAATAACCTTCATTTCGACAGG
AAGGAAGATGGTGAGAAAAGTGGCCAAAGAGTATGACTACGAC