Detailed information on CNT30555414


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONOSAT000248, E-value = 0.0

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30371298Oryza glaberrimaOryza glumipatula42.7141.0999.052304reverse complement
CNT30109436Oryza glaberrimaOryza longistaminata42.7341.0998.092305reverse complement
CNT30104296Oryza glaberrimaOryza rufipogon37.89100.0599.222044forward
CNT30578161Oryza glaberrimaOryza barthii56.855.399.413064forward
CNT30117812Oryza glaberrimaOryza nivara37.7855.2998.042038reverse complement

Expression of CNT30555414

Peptides detected in this lncRNA

>peptide 1 (30 aa)
MLYRRLKIQRKFKSLHSKRNQRVAKKKGAA*

>peptide 2 (31 aa)
HPLPQTEHPNIPSTDMKQVKKKFNSKAKESS*

>peptide 3 (36 aa)
MINQQKGSERGEIETDGFLYLPTYQPTRGGGGKGEE*

>peptide 4 (38 aa)
MVNNVLETKILNVQTRMNHYPRQIKRQPMTLQSKANNS*

>peptide 5 (35 aa)
MEWRNHLIHQCLILAMTNSYHRLQFLWFQYAKKCS*

>peptide 6 (35 aa)
MYDIFRKILWVISNKVQEIYVNFKSAINSYKKHNI*

>peptide 7 (40 aa)
MIKQIIARVKENKRLNSTQIILFRTQKASELLIALQNGSY*

>peptide 8 (70 aa)
MDSFTYRLTSPPAAVGGKGKNKSHRAIHSDERQRGTGQRACGEERRANRGGRVGRRWWWRGAAPVERVKPS

>peptide 9 (55 aa)
MRKEVAPVLNGMEKPSYTPMSNPSHDQFIPQASVSLVSICQKMFIMQIKWSDNRF*

>peptide 10 (65 aa)
MVIYKLIKYIIVKINYHITTTLQTKSGHGSPNHLIITISNIFRMLKEHIEDNTPNEQTKGQTILD*

>peptide 11 (51 aa)
MNCVILYEEEGTHYIAHPYRQKKIVYISCSLSMELSTQHTQHSNNLFGKRQ*

>peptide 12 (41 aa)
MTPFRISITLNHLQIIFSLVVIKQINISLVLSELNKLTSVI*

>peptide 13 (54 aa)
MAVTNSTMSRKKHYIYLNLVSHTLLDTNTYKNTSFHTVIPSYFDIKRTNIRKAT*

>peptide 14 (29 aa)
MILDYCLHRMYMKYKVSASAFRTKDIQHG*

>peptide 15 (41 aa)
MFKCSDMTYLPIKLPDLKEKPQSTELQATELSLTTSITTLK*

>peptide 16 (41 aa)
MKITGFVPQTEQVKQQVICSSCTTIKIIHREGSQKELLKSS*

Sequence

>CNT30555414
GGCACCCCCTACCCCAAACAGAACACCCCAACATTCCGTCTACAGATATGAAGCAAGTGAAAAAAAAATTTAATTCAAAGGCAAAAGAATCAAGTTAAGC
TACCCATAGCCCATCAAACATCAAGGAAACCAAAAGGTTTAACACAAAACAACTATAATCACAAATCAGTCATCAGTAATTCACAGAGCTCTACAAGCAA
CCTATATCAGAGGGAGCTATACCAACGAAAAGACAAAATTCAAATGCAAATGTAACAATCACAGTAAAATATACTGGCAATGCAAATGCGCATAGGAAAT
AGACATTCTTGCTTACAAAGCAGGCAGATAACAATACACCTAGTACAACACACCTCATGATAAATGGAAGATCCCATTCATTCTTTCAAGGAACGACAAC
CAGTAACAATCAATATTAGAACAACATGAAAAGGACGGTTGGTAGAACGCTTATGTAAAATATTGATCTCATCCAACTGAAATGATCTTAGATTATTGTC
TTCACAGGATGTACATGAAATACAAAGTCAGCGCAAGTGCATTCAGAACTAAGGACATCCAACATGGTTAATACTACTCCAACACGTACGCCTCAAGCAT
TAGAGCAGACTACACACAGAAATGAAGCCACATAATTTGGATTGAGCATACCGAATTTAATTGACAGTCAAAATGTTAGGATTGCATTTCCTAAATAAAA
TGATGTACACAAACTGACAGAAGGTTATAGGCCAGGACAATTATAATAACAAGTTATCCTTGAAGCAATGTTTAATTTAGTTGCACATTAATCATCTTGT
TAAAGATCATATTGAACCACGGTGGAAAGTATAAATCCGAAATATTTCAGTTATTATACATTCAGGACTATGCGCACTATAGTGATTTTATTCCATATTC
ATCATCCTGTTCAGTAAACTATAAAAACTAGTATTTACTATCACATATATCAATACTAAATCAGAACTGTAGGTGCATCGCTGATCACATATATCAATAC
TAAATTAGAATAACAGCTAATGAAGAAAACACAAAACAGAAATCAGCATAAGCCAGGTCAGTGATCAAGTCATAATCAAGAATTCAAGATGACATTAATG
TTAACATTTTTAGGTGTAAATCACGTTGCTAAAAAGTAAAAACATTTTAAATATGCTGATTAAAGAAATTTTCTGATATGCACTGCCAATATGTTGTACA
GAAGATTAAAAATTCAGAGAAAATTTAAGTCTCTGCACTCTAAAAGGAATCAACGGGTAGCCAAAAAGAAAGGAGCAGCATGAACTATGATTAAACAAAT
TATTGCCAGAGTAAAAGAAAATAAAAGGCTCAATTCAACCCAAATTATTCTCTTTAGAACTCAAAAGGCATCGGAGCTTTTGATAGCATTACAAAATGGC
AGTTACTAACTCAACAATGTCCAGAAAAAAACACTATATTTATTTGAACTTAGTATCTCATACATTACTAGACACAAACACATACAAAAACACAAGTTTT
CACACAGTAATCCCTTCATATTTTGACATCAAACGAACAAACATTAGGAAAGCAACCTAGAACATTGATATTATATAGCCTTTGTAACAAAATGTAGATG
GAAAATAAGCAAAGCTGGAATTAATAATTAGCAAGAAGAAATGAAATGTTAAGGATATATAGGACATAGGATATATTTAGCTCACAGAGAGCATCAAGCT
TTAGACAATAAAATAAAAAAAATAACTAAAAGCACTTAAGCATTAAATAAAAATAGATTTAAAACCACCAGATAATATGGAGCGATTAAGACTGGTTCAG
ATTAAAAAAAAAATTGAAACCATGCACACAAAGTTTGATGCATAAATAAAACCACCATATTGCTGTTTAGCTGAACTATAAAGGATTAGTATTCTTCAAG
TTCGCTTTAGAAAATTCACCTTAAATGACATAATAATAGAATGGTGAACAATGTTCTTGAAACTAAAATTCTGAACGTACAAACAAGAATGAACCACTAC
CCAAGACAAATAAAACGGCAACCTATGACACTTCAATCGAAGGCAAATAACAGCTGATGATTGCCCTAGCTCATTTCACATAAGAAAAATGACGCAACAA
AACAAACCTAAGGACAAAATTCAAATCAAATAAAGAAAAGAGTGCTAGCCATCTAACGAGAACATGCAAGGACCATACTAAAATGAAATGGAAGTTCCAC
ACATGAAGGTATATGATACAAAGAAAGAATTCTACAGAAAACAAGGTTAGGTTGAACTAATTAATTTATCTTCAAAGCATGAAGATATTGAAATAAACAA
GCACTACCCTGAAAAACCTAATAAGCATGCATACGGAGTACATATTCATCATAAATAAAATAAATGAAACTGTGTTAATCAAGTGATACATTTTGAATAA
ATGTCATAATATTATACGAAGAGGGCACCCATTATAGCTCATCCATACAGGCAAAAAGATAGTATATATTAGTAGCTCTGTTAGTATGGCACTACCTACA
CAACATACAAACAGTCAAACAAATAAATGAAAGTGTTAATCAAGTGAGACATTTTTATGAACTGCGTAATATTATACGAAGAGGAGGGCACCCATTATAT
AGCGCATCCATACAGGCAAAAAAAGATAGTATATATTAGTTGCTCTTTGAGTATGGAACTATCTACACAACATACACAACATTCAAACAATCTCTTTGGT
AAGCGACAATGAATGAGATACTAGCCTTAATTAAGGTCCTTTCTCGGTAAATCTTAAAGTGGGGGCACTAAAAAAAGGCATGTGCCAGACGAACTGTAAG
AAGAAAATATAAAAGATAATTAATGTCAGGGGAGATAATCTACAGACAAGTTAGCAGAATTATATTTTTAGTGTACATAGTGAAAATGTATGTATGATAT
ATTTCGAAAAATATTGTGGGTGATTAGCAACAAAGTTCAAGAGATTTACGTCAATTTCAAAAGCGCTATCAATTCCTATAAAAAGCATAATATTTAGAAA
ACATCCACATTTCTATCTTAGCCTAGGCAAACAATGTTGAGACTGTAAACTTCAGTTATCTACAAACTTAGTTAGAAGATGAGCAACTTTCAAAACAGTG
GACCCTGCCATTTACTTGAAATATCCTAGTTCCTGAATGAGGTGGTACATTCAATATGCAAAATTAAATCAGGAGAAAACAATGCCATCAACTTATTTTC
CGTACAGATCATGGTAATATATAAGTTAATAAAATACATAATTGTCAAAATAAATTATCATATTACAACAACCTTACAGACCAAATCAGGACATGGAAGT
CCGAATCATTTGATAATTACAATTTCCAACATCTTTAGGATGCTTAAAGAGCACATTGAAGACAACACACCAAACGAACAGACAAAGGGCCAAACTATAC
TGGACTGAACCCACCATCTAGCTAGTTATAGAACATTACATGCCCAGATGTTAAAGATACTACAAGAGAAACAAGTTGGGCCAACTAATTAGAGATCAGA
TAGTGCTACTGATAACTCTTCCACAGTTCATAAAGCATAGATTTCTACTCACAAGAACATTTAATAGATGGTTTTATAATGGCACACTTTACACAACCAT
CGAATTTACTTCTCAGAGCAGGAAAGCAAATTCAGTTCCATCAATTTTCTTGAAACAAATCTTCAAATTATTTTCACCATTAGTCAAAAGATTCCAGCAT
CACCTTCATAACCTTGTATATTGTTCAAAGGAAGTAACTGCCAAAAGAATCATCTATCATAGAAACTTTAGGATGGGCCTTTTAGCTACTACATAACCAT
CTCCATCTTAACTGATAAATTAGCTTTCCGGAAGTAAACAAGTTAACATCAAAATTCTGTGAGAACTATGACCATGTTTAAATGTTCTGACAAGATTGAC
TGATCCATGAACCATAGCAGGATTTGACTTAACAGCAAAGTACCAAGCAGATAAATTTCCTCCAAATAACATCATTCACTTGTTAGTTTTGATGAGAAAA
GAAGTAGCACCAGTCTTGAATGGAATGGAGAAACCATCTTATACACCAATGTCTAATCCTAGCCATGACCAATTCATACCACAGGCTTCAGTTTCTCTGG
TTTCAATATGCCAAAAAATGTTCATAATGCAGATTAAGTGGTCGGACAATCGCTTCTAATGGAAGCAAACCAACTACACAATATTAACATATTGAAAATT
CAATTAATTGCAATTAGTCATAACCCTAAACCAAAGCATTAAGGTTCCTACAAACTAACACCAGTGAACATGAAAATAACGGGATTTGTACCTCAAACTG
AACAGGTCAAGCAGCAAGTAATCTGTAGTTCCTGTACTACGATAAAAATAATCCACAGGGAAGGCAGTCAAAAAGAGCTCCTTAAATCCTCGTGAAAGAA
ATCCTGAAGTTAAACTTTAACTAAGAACTGACACAGAAGAATCATTCCAACGCCCTAGTTTAACTTAAACTTTAGCACATATTGCCAATTTTTAAATTCC
AAAAAGCAATACATGACGCCGTTTAGAATTTCGATAACACTCAACCATCTTCAAATAATCTTTAGTCTTGTCGTTATTAAGCAAATTAACATCAGTTTAG
TCTTGTCGGAATTGAACAAATTAACATCGGTGATTTGAAAGCTCTGAGCAGACCCAAGAAAACCACCTCCCATCATGTTTAAATGTTCTGATATGACTTA
CCTTCCCATAAAATTACCAGACCTGAAGGAAAAACCGCAGAGCACAGAATTGCAAGCAACCGAATTGTCACTAACTACAAGCATCACAACCTTGAAATGA
ACAGAAGTATAATCTTAGCCCAGTGAGCAATCCTAACCATGACAATTTCAGAGCACAAACTTCATTTTATCTAGGCTTGATCATACCCAAAATATCCACG
GTACAGCTTAATTGAGCTGACAATCCATCTCACCGAACAGAAACTGAAGCAAACCAACCGACCTCGCAATCTTAAATAGCAAATCACAATTAGCCATAAA
CCAATCGAAAGAAGGGCCGTTCAGAGAACTAACGCAACAGCAAGAGACGAATCGCCCAAACTAGACCCCCAAACCGAACGGATCAAGCAGTCGCCTAAAC
TAGAAACCGGACCGAACCGATCAAAGCACCACCTGATGATCAATCAACAAAAGGGCAGCGAACGAGGTGAGATCGAAACCGATGGATTCCTTTACCTACC
GACTTACCAGCCCACCCGCGGCGGTGGGGGGAAAGGGGAAGAATAAAAGCCATCGAGCAATCCACAGCGACGAGAGGCAAAGGGGAACGGGGCAACGGGC
TTGCGGAGAAGAGAGGAGAGCCAACCGAGGAGGAAGAGTCGGGCGGCGCTGGTGGTGGCGAGGGGCGGCGCCGGTGGAGCGAGTGAAGCCTTCG