Detailed information on CNT30555406


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30105566Oryza glaberrimaOryza longistaminata12.0624.295.41327forward
CNT30102322Oryza glaberrimaOryza rufipogon5.3929.7492.47146reverse complement

Expression of CNT30555406

Peptides detected in this lncRNA

>peptide 1 (35 aa)
MVGEIKLYFKGFRYNKALPYNLFWCSHFRNHIKVF*

>peptide 2 (75 aa)
MYRSFCLPLWIDVVCTLYDLWNGSLLGRPGNGTHLSTETIFVTCFHSVWTIHNLFSLSGKVNQLLCHSSGHLCIS*

>peptide 3 (41 aa)
MFADSAMIATMNTMTRYGNEYGRDSVPPVNPSANPNLVRSS*

>peptide 4 (44 aa)
AVRRRTSALVVVPPRDSPPHATTSCPCRCRGGSPFFRSPARDYP*

>peptide 5 (64 aa)
PQSAAGPAHSLSCLLATPRRTPPHRAPAAAVVVPHSSGAPPGTTPDVAGCSPFCRSCCARYAVG*

>peptide 6 (76 aa)
MHYEITREKGIPRGHGLWLMLSEILIEDIYIKKNECIDHSACHFGLMSSALYMTFGTVVCLGDQGMVPISLLKQFL*

>peptide 7 (49 aa)
MIALLLLFTLCVRVFVAHNVLSSIHLQSIHQWRTHVWWQKEFYLERSND*

>peptide 8 (66 aa)
MENISRRFSLVPCLEEGTPRGSSRSVRDAWIYLSIKSSTFCTARISFFQINLLSHLMIFPAFKFLG*

>peptide 9 (57 aa)
MVFASLCTMECRLRMSSTAVPVMATTCPLLQQWRISVVGFRWCRVWKKELREGVAGQ*

>peptide 10 (41 aa)
MIGETNSCLSRRRITITTKFTFIALWRAQLYRDGWRDQVVL*

>peptide 11 (41 aa)
MNRLCTPNPLGLPSDMHWNLSNCRILINSNASLAFYKYVTS*

>peptide 12 (83 aa)
RSPPPDQRTRCRASSRLPAARHHIVPLPLPWWFPILPEPRPGLPLTSPVVLPSAGAAVHATLLAEMATWFRWSSPLCVRWSAG*

Sequence

>CNT30555406
CCGCAGTCCGCCGCCGGACCAGCGCACTCGTTGTCGTGCCTCCTCGCGACTCCCCGCCGCACGCCACCACATCGTGCCCCTGCCGCTGCCGTGGTGGTTC
CCCATTCTTCCGGAGCCCCGCCCGGGACTACCCCTGACGTCGCCGGTTGTTCTCCCTTCTGCCGGAGCTGCTGTGCACGCTACGCTGTTGGCTGAGATGG
CAACGTGGTTCCGATGGTCTTCGCCTCTTTGTGTACGATGGAGTGCCGGCTGAGGATGAGCTCAACGGCGGTTCCAGTGATGGCGACAACTTGCCCCCTG
CTCCAACAATGGAGAATATCAGTCGTAGGTTTTCGTTGGTGCCGTGTTTGGAAGAAGGAACTCCGAGAGGGAGTAGCAGGTCAGTGAGAGACGCATGGAT
CTATTTATCGATCAAATCCAGTACCTTCTGCACTGCACGAATCTCCTTCTTTCAAATTAATCTATTATCACACTTAATGATATTTCCTGCTTTCAAATTC
CTTGGTTGATTGTTGTTAGGACCAACCCAATCTAATGATATTTTTTTAAATACTATAGTTCCTTACATGCGAGCAAATGATTGACCTGTTCAAGTAAAAG
AACAAATGATTGCTTTATTATTGCTTTTCACTCTGTGTGTGCGCGTTTTTGTTGCTCACAACGTGTTGTCCTCTATACATCTACAGAGCATCCACCAATG
GAGGACGCATGTATGGTGGCAGAAAGAATTCTATTTAGAAAGAAGTAATGATTAGCTTATTTCTCCTGCAGCAAATACCTATTTCATTTCTGATAGATCA
TTTAAATGTTTGCTGACTCGGCAATGATCGCGACAATGAACACTATGACAAGGTATGGCAACGAGTATGGCAGAGACTCTGTCCCTCCTGTGAATCCATC
GGCTAACCCCAATCTGGTACGCAGTTCTTAAACCATCGATCCTCCCTCTGAGATTGGCTCAAAATTCTACCTATTATATGCATCTCTTGCACCCACCATT
TGCCAATCACCATAATGCTTCTGTTTGGAGGTATTGATACTCTTTTATTGTCTTTGCTAAGGTGATATATGTGGTTTTCAGACTGATCATCAGATTATTT
AGGTTTAATCCCATGATGGCATGCCATCTTCATTGGTATTGTTGATCCATATCTCATCGAAGTCCTCTATAATCCTGTAAATCTCTATATATAAAGTATC
CGACCTTTGAATCTGGTTGCACTAAAGGTACAATTACTTTACATGTCCATTTCATTTGTCTTAAATTCTTGGTTTCTATATGCATTATGAGATAACCAGA
GAAAAAGGAATTCCCCGTGGCCATGGTTTATGGTTGATGTTATCAGAAATTTTAATTGAGGATATATATATAAAAAAGAATGAATGTATAGATCATTCTG
CTTGCCACTTTGGATTGATGTCGTCTGCACTTTATATGACCTTTGGAACGGTAGTCTGCTTGGGAGACCAGGGAATGGTACCCATCTCTCTACTGAAACA
ATTTTTGTAACTTGTTTTCATTCTGTTTGGACCATACACAACCTTTTCAGTTTAAGTGGAAAAGTAAATCAATTACTGTGTCATTCTTCTGGTCACCTGT
GTATATCTTGAGGTTTATTCATATTATAAGGTCACCTGTTTATGTCTTGAGATTTATATATATTTAGGCCAATGTGTACATCTTCAGATTTGGAGTGAAT
AAAACTTTGCAATATCCATGTATATGCCTCTCATCAAATAAAGCTATTTGTTTTGTAACTTACTGAATACTGATGGCAAAATTTTAATTTTTTCTTGGCA
GGAGCTCTGCAAAGCATTTCCATTTCTCAGTGTTTCTTGTTTACCACTTTACCAATATATAATTTTCAAGTTTCAGAAGCTTCTTGAGATATTATTGTGA
GGTAATAATATGTTGCTCATGTTATCAGCTGAGAACTCTGTCATATGAATTAAAATTTGGTACATCTCCATCTAATCCCATGATAAATAGTGATAACCTA
TTTCTGAAATATTTAGATCCCACGATTTTTTAATTTCTTATAATGGAGGCAGAGACGAAAAGGAGAAGATTGTAATATGAATTTTTTTCCTTACATTTTG
TTTCTATGTAGTAGAATATGGAAGTAAGATTCACTTCAAACTTTTAAATAATTTAGTACACTTTCCTGCAGGTAAACGAGCATTCTGATAGAGCCTATAG
CTGGTGGCCACTGATCTGTGCCCCTTGGCCTATTGCAGCGGACAATGTAGTTGGAAGCTCTACACCAAATCCATTTGCATGAACAGGTTATGCACACCAA
ATCCCCTTGGCCTACCCAGTGACATGCACTGGAATCTTAGCAACTGTCGGATCCTTATTAATTCAAATGCATCACTCGCATTCTACAAATATGTAACATC
GTGACAACTTAGGCTTTGATGATTGGGGAGACCAATAGTTGTCTTAGTAGGAGAAGAATCACCATCACCACTAAATTCACTTTCATTGCACTCTGGCGTG
CACAATTATACAGAGATGGTTGGAGAGATCAAGTTGTACTTTAAAGGCTTCAGATACAACAAAGCACTGCCTTATAATCTCTTTTGGTGTTCACATTTCA
GGAATCATATAAAAGTATTTTAAATTGTGTATTAAAAGATCAGATTGTATGAAGATAACCACTGTGCTAAATTAAAGATGTCAATTCAAATATAAATTCT
CTGGAATTTTT