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Detailed information on CNT30555356


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONORUT000921, E-value = 0.0

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30695095Oryza glaberrimaOryza sativa23.3857.8398.27347forward
CNT30102611Oryza glaberrimaOryza rufipogon23.3868.7198.27347forward
CNT30117760Oryza glaberrimaOryza nivara23.5845.499.14350forward

Expression of CNT30555356

Peptides detected in this lncRNA

>peptide 1 (83 aa)
LFSLSLPWPAITVVGRSPSPEQYRPIPRAIELASMRGIHFSPFPSSSTSESNLTGALSLLPVHDLPSAVPAISLTPFAGHCHP*

>peptide 2 (44 aa)
MRTTVGASLFPRPPQDAAQLALELCVILAAPPPLTVVRVTLPPR*

>peptide 3 (48 aa)
LFSLLAMAGYHCRRPISLTGAIPANPSRHRACLDERNPFFPFPLFLHL*

>peptide 4 (34 aa)
SFLSPCHGRLSLSSADLPHRSNTGQSLAPSSLPR*

Sequence

>CNT30555356
CTCTTTTCTCTCTCCTTGCCATGGCCGGCTATCACTGTCGTCGGCCGATCTCCCTCACCGGAGCAATACCGGCCAATCCCTCGCGCCATCGAGCTTGCCT
CGATGAGAGGAATCCATTTTTCCCCTTTCCCCTCTTCCTCCACCTCTGAATCAAACCTCACCGGAGCTCTCTCTCTCCTCCCGGTTCACGACCTTCCATC
CGCCGTTCCGGCTATTTCCCTTACTCCCTTTGCCGGCCACTGCCATCCCTAGGTGCGTTGCAGTCGGGAACACCACTGGCCGCCGGCGTCACCGCCTCCT
CGCCACCGGAGCCCGGCGCCCCCTCTCCTCCTCCTCTCTGTTCGACCGAGGAGAAAAAGAAGAAAGAGACGGGAAGAAGAAGAAGAAGAAGAAGAAGAGG
AGAAAAAGAAAAAGAAAAAGGAATCCCTGACAGGTGGGCCCATGAACAGTATACTTTCGCAATTTACTCTATTTAATTCAAATTCCAATCTTTAGAAGCC
CATATCTCCTAAACCGTAGATCCGATCTCAGTGAAACCTAGACCTAAATTCATCTAAATTCAAATGCTTCATTTTGATGCCTAATTTGTTATTTTATAAT
TTTATTTGAATTTATTCAAATATCATTTGAATTTATATTTGCCTTTTTCAAATATTTTCTTTTACCCCAAAATACCCTTTAGCCACTAAAAAGCCGCCGG
TTGGAACTTTACGCCTTCCATGGGGACGTTTGCGGTCTATTGGCCCCGACGTCGAACCGTTGGTTGTAAAGCCCGGTAAAACCAAACCCAAGGTCGAAGT
GCTGCTCCCGGCATCCCACGCCTTGATGCGTACAACGGTCGGAGCTTCACTATTCCCTCGACCTCCACAGGACGCCGCACAGTTAGCTCTTGAGCTCTGT
GTGATCCTAGCCGCTCCGCCGCCACTCACGGTTGTCAGAGTAACACTTCCGCCTCGCTAAACCTGCACAAACCTCCCATCCCTCTGGCCGTTATATTGTC
TATCGACACCGGCTACCAAACCTAGTCGTCATGCTTTAGCTACGACTAGCGAACACCTAAACCCTAGCCAATATTTATCTTACCTCGATATCAGACAACT
GAAACCTTAATCAGCCTGCCATCCAAATCCCACATCCACTACAATATTACTTATCCGCCATATCTTAGCCACCTACCATTTTATCCACCATATCTTAGCC
ACCTACATAAAATATAGAACCTGGCTGATATACTGCCCTACTCCTCAATCGGCCTAAATATAACCGAACCCTAGGTATAATCCTATCCAAACCCACTATC
AGCCAATACCAGTCACATATCTGCTCAACCAATTCAATTATCCACTATACTCCCTATCCACCAACCAATCAGAGTTTGCACATAAAATATAGGTGACCTT
AGCCGCTTAATTCCCTCTCTACCCTAGCCACCAACTCTTTAGAATCCACATATAAAATATCAGCCCAGTAATCCATATACCTGC