Detailed information on CNT30555334


BLAST search results

BLAST vs Swiss-Prot:
sp|Q6PL11|SKP1_ORYSJ, E-value = 1e-30

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30671215Oryza glaberrimaSetaria viridis19.8226.7596.9265forward
CNT30317831Oryza glaberrimaCorylus avellana36.2824.3486.55119forward
CNT30516841Oryza glaberrimaJuglans regia36.2814.6986.55119forward
CNT30303844Oryza glaberrimaTriticum aestivum19.8226.3298.4665forward
CNT30589619Oryza glaberrimaMusa acuminata42.9955.0888.65141forward
CNT30666847Oryza glaberrimaTriticum dicoccoides19.8226.198.4665forward
CNT30143075Oryza glaberrimaLolium perenne46.0414.3592.72151forward
CNT309022Oryza glaberrimaZea mays17.3826.2787.7257forward
CNT30650073Oryza glaberrimaRosa chinensis29.5716.788.6697forward
CNT30686076Oryza glaberrimaTriticum urartu46.6554.4596.73153forward
CNT30348724Oryza glaberrimaEragrostis tef35.3713.2994.83116forward
CNT30365074Oryza glaberrimaSorghum bicolor51.5225.891.72169forward
CNT30592775Oryza glaberrimaEragrostis curvula37.850.4189.52124forward
CNT30112782Oryza glaberrimaFicus carica60.0623.6882.23197forward

Expression of CNT30555334

Peptides detected in this lncRNA

>peptide 1 (77 aa)
QDEVEEGGLVDLDEVGVPVLEDLGVDVGERDAVVGAVVLDHVADRLRLHRHRLLHLELLPVGALQGDHLLLSLSRHQ*

>peptide 2 (92 aa)
RMRSKRVAWSTLTKSASQFLRILELTLGSGMPLSAQSSSIMWRIVCDSIATASSTSNSSPSELFRVIIFFSPSAAINRALRNRSRSRSSPRR*

Sequence

>CNT30555334
CCAGGATGAGGTCGAAGAGGGTGGCCTGGTCGACCTTGACGAAGTCGGCGTCCCAGTTCTTGAGGATCTTGGAGTTGACGTTGGGGAGCGGGATGCCGTT
GTCGGCGCAGTCGTCCTCGATCATGTGGCGGATCGTCTGCGACTCCATCGCCACCGCCTCCTCCACCTCGAACTCCTCCCCGTCGGAGCTCTTCAGGGTG
ATCATCTTCTTCTCTCCCTCAGCCGCCATCAATAGAGCCCTCCGAAATCGCTCGCGGTCTCGGTCGTCGCCGAGGAGGTGAATCGCACGAAACCCTAGCT
TTCGCAGCGGCGGCGATGGGGATTACGG