Detailed information on CNT30555251


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30696775Oryza glaberrimaOryza sativa86.9898.3399.72354forward
CNT30596989Oryza glaberrimaOryza meridionalis101.23101.2390.05412forward
CNT30109832Oryza glaberrimaOryza longistaminata22.1127.4491.1190forward
CNT30575314Oryza glaberrimaOryza barthii24.089.6996.9498forward
CNT30115936Oryza glaberrimaOryza nivara24.0812.7896.9498forward

Expression of CNT30555251

Peptides detected in this lncRNA

>peptide 1 (36 aa)
MQPQIQGVHHVNAANAAAESDYPRSTFLIMSNLSVN*

>peptide 2 (51 aa)
MAFRYRLFLIFVTMEIVMLIVRSAASGSSATDAATDPRCPPCKCCKCGCRV*

Sequence

>CNT30555251
AAGAAAGATTAAGCTAGCGGTGAAGGCGGAGATATTCATTTCTGCCCCTATTTGATCATGGCTTTTAGATACCGCCTGTTTCTTATATTTGTGACGATGG
AGATCGTTATGCTTATTGTCAGAAGCGCGGCGTCAGGTTCATCGGCCACAGATGCAGCCACAGATCCAAGGTGTCCACCATGTAAATGCTGCAAATGCGG
CTGCAGAGTCTGACTACCCTCGTTCCACTTTTTTAATTATGAGTAATTTATCTGTGAATTAGAGCTATGTTTTATACTGTAATATTTGTATTACTATTAC
AAAAGTTAGTCCATATAGATCGCTGTAGCCATTGATCAACTCAGACATACCAGACAATGACACATGCATATGTATTTGTTAATGAGCTTTACAAGAAGCG
TATGTCC