Detailed information on CNT30555236


BLAST search results

BLAST vs Swiss-Prot:
sp|Q93XM7|MCAT_ARATH, E-value = 3e-48

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30696466Oryza glaberrimaOryza sativa87.3897.6199.78450forward
CNT30522315Oryza glaberrimaSetaria italica36.731.8291.01189forward
CNT30515Oryza glaberrimaZea mays12.823095.4566forward
CNT30577915Oryza glaberrimaOryza barthii82.5276.4499.76425forward
CNT30117741Oryza glaberrimaOryza nivara42.9169.599.55221forward

Expression of CNT30555236

Peptides detected in this lncRNA

>peptide 1 (78 aa)
LSSPSTIHQRNKSTKPESLCDLGNFYIDSICVYRITLFLHPQMRWMTARIRIRIRRRKLRVKKEEDVMIHEFSLVQSE*

>peptide 2 (39 aa)
MTLFTTSVGYCLIASYTPNMSAFPGTSRASVGPSPLNSPP

Sequence

>CNT30555236
CTTAGCTCACCATCAACAATTCATCAACGGAACAAGTCCACTAAACCAGAGAGTTTGTGTGATCTAGGAAATTTTTATATAGATAGTATTTGTGTGTACA
GAATTACACTGTTCTTACATCCACAGATGAGATGGATGACAGCAAGAATCAGAATCAGAATCAGAAGAAGAAAATTAAGGGTCAAGAAGGAGGAGGATGT
AATGATACATGAGTTCAGCCTAGTGCAGAGCGAGTGACCTCGTAGGCCAAGAAGCAGGCGGCGTTGGCGGGGACACTGCGCGCCATGGCCGGGCCGAAGC
CCTTGTAGAGGCCCTTGACGCCGTCGGCGGCGAGGATCTTCCTGAAGGCGTCCATGGAGCCGGAGTACTTGGGGTTCTTGTAGTCGTCCACCTGGATGAC
GCTCTTCACCACGTCCGTCGGGTACTGCTTGATCGCCTCGTACACGCCGAACATGAGCGCGTTCCCCGGCACCTCCCGCGCCAGCGTCGGCCCCAGCCCC
TTGAACAGCCCCCCC