CANTATAdb - search

Detailed information on CNT30555190

BLAST search results

BLAST vs Swiss-Prot:
sp|P14009|14KD_DAUCA, E-value = 5e-08

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30696384	Oryza glaberrima	Oryza sativa	76.65	99.4	99.4	499	forward
CNT30103740	Oryza glaberrima	Oryza rufipogon	90.32	100	99.66	588	forward

Expression of CNT30555190

Peptides detected in this lncRNA

>peptide 1 (33 aa)
MRLRSMGRLSLMPSTLAHTCSFSASRGHDDPPP*

>peptide 2 (38 aa)
LGMHKLIHPTDIPNLRVPISDHCIYATKKYISILLTKL*

Sequence

>CNT30555190
TTGGGCATGCATAAATTAATTCATCCGACAGATATTCCAAATCTTAGAGTTCCAATCTCTGACCATTGCATATATGCGACAAAAAAATACATTTCCATTT
TATTGACGAAACTATAACAAATCATGAGAAACAAAAAAAATACAATGATCATAGCGCTACCAACGGATCACGAACCATAGAATCAAAAGAAAAAAAAAGC
AAGAAATTAACAACACATCAAGATATTGGGGGTAAAAACAACATCAAGATACAGTACTCCCAGCCATGGAGTGATCAAGTGCAACACTAGCTCTATAGAT
CTCGATCTAGTGCACGCACTGGTAGTCGGATGGGCAGATCTTGCCGCAGTTGTTGAGGATGAGGCTGAGGTCGATGGGGAGGTTGAGCTTGATGCCCAGC
ACGTTGGCGCACACGTGCAGCTTCAGCGCGTCGCGCGGGCACGACGACCCGCCGCCGTAGTGAGGCGTCGGCGGCTTCGGCCTCGGCGCCGGTGGCTTCG
GCGAAGGGCAGTCCGGGCAGGCCACGGCCATGGCCACCACCAGGAGGCTCACCGCCAGCACAAGCGCCGCCTTCGCCGCCATTGCTGCAACTAATCGAGC
TAGTGTAGCTAGCTAGTAGCTCGAGCTTGCTGCTGCTTGGTTGCTGTGGTT